RnoEX0025825 @ rn6
Exon Skipping
Gene
ENSRNOG00000042367 | Cyp2ab1
Description
cytochrome P450, family 2, subfamily ab, polypeptide 1 [Source:RGD Symbol;Acc:1586963]
Coordinates
chr11:84509502-84513250:+
Coord C1 exon
chr11:84509502-84509643
Coord A exon
chr11:84510449-84510636
Coord C2 exon
chr11:84513109-84513250
Length
188 bp
Sequences
Splice sites
3' ss Seq
CCTCACTGAGCTGTCCGCAGAGA
3' ss Score
3.5
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCCATGGATGACCCTGTCTCCACATTCAGTGAGGAGAACCTTATCCAAGTGGTGATTGACCTATTTCTGGGAGGCACAGACACCACGGCCACCACTCTGCACTGGGCAATCATATACCTGGTCCATCACAGAGCCATCCAAG
Seq A exon
AGAGAGTGCAGCAGGAACTGGATGAGGTGCTGGGTACTGCACAGGCCGTCTGCTATGAGGATCGAGAGCGACTGCCCTACACCCGTGCTGTCCTCCACGAGGTACAGCGCCTTAGCAGCGTTGTGGCCGTGGGCGCTGTACGTCAGTGTGTGACTCCCACCTGGATGCATGGTTACTATGTATCTAAG
Seq C2 exon
GGAACCATCATCTTGCCCAATCTGGCCTCGGTGCTGTGTGACCCCGAGTGCTGGGAGACCCCTCATCAGTTCAACCCTGGCCACTTCCTAGACAAAGATGGAGACTTTGTGACCAATGAAGCCTTCCTGCCCTTCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042367-'4-7,'4-6,5-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.6=100)
A:
PF0006717=p450=FE(14.0=100)
C2:
PF0006717=p450=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGATGACCCTGTCTCCA
R:
CCATCTTTGTCTAGGAAGTGGCC
Band lengths:
242-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]