GgaEX6046404 @ galGal3
Exon Skipping
Gene
ENSGALG00000008178 | E1C788_CHICK
Description
NA
Coordinates
chr9:16787672-16789208:-
Coord C1 exon
chr9:16789067-16789208
Coord A exon
chr9:16788339-16788526
Coord C2 exon
chr9:16787672-16787813
Length
188 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTTTTTCCTCCCTAGAGA
3' ss Score
11.7
5' ss Seq
AAGGTATCC
5' ss Score
8.33
Exon sequences
Seq C1 exon
ACTAAAAATGTCCCAAATTCCACCTATGATGAAGAAAACATGTTGCAGTCTGTTTTTGATCTCTTCCTGGGTGGCTCAGAGACCACAGCTACCACTCTACGTTGGGCATTACTCTATATGGTGGCTTATCCAGACATCCAAG
Seq A exon
AGAAAGTCCAGAAGGAGCTGGATGCTGTTCTGGGTTCTTCCCACCAAATCGACTATGAGGATCGGAAGAAACTGCCTTATACAAATGCTGTGATTCACGAGATCATTCGCTTTAGCAGCATCATTTTAATCACTATTCCTAGGCAAGCAGTGAAGGATACAACTGTGTTGGGTTATCAGGTTCCGAAG
Seq C2 exon
GGTACCATCATCATGGCAAACATAGACTCAACTCTTTTTGACCCTGAGTATTGGGAGACCCCTCACCAGTTCAACCCTGGCCATTTCTTGGACAAGGATGGGAATTTTGTGATCCGAGAGGCGTTCCTAGCCTTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008178-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.2=100)
A:
PF0006717=p450=FE(13.5=100)
C2:
PF0006717=p450=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAAACATGTTGCAGTCTGT
R:
CTAGGAACGCCTCTCGGATCA
Band lengths:
243-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]