GgaEX6046404 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C788]
Coordinates
chr9:15157587-15159123:-
Coord C1 exon
chr9:15158982-15159123
Coord A exon
chr9:15158254-15158441
Coord C2 exon
chr9:15157587-15157728
Length
188 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTTTTTCCTCCCTAGAGA
3' ss Score
11.7
5' ss Seq
AAGGTATCC
5' ss Score
8.33
Exon sequences
Seq C1 exon
ACTAAAAATGTCCCAAATTCCACCTATGATGAAGAAAACATGTTGCAGTCTGTTTTTGATCTCTTCCTGGGTGGCTCAGAGACCACAGCTACCACTCTACGTTGGGCATTACTCTATATGGTGGCTTATCCAGACATCCAAG
Seq A exon
AGAAAGTCCAGAAGGAGCTGGATGCTGTTCTGGGTTCTTCCCACCAAATCGACTATGAGGATCGGAAGAAACTGCCTTATACAAATGCTGTGATTCACGAGATCATTCGCTTTAGCAGCATCATTTTAATCACTATTCCTAGGCAAGCAGTGAAGGATACAACTGTGTTGGGTTATCAGGTTCCGAAG
Seq C2 exon
GGTACCATCATCATGGCAAACATAGACTCAACTCTTTTTGACCCTGAGTATTGGGAGACCCCTCACCAGTTCAACCCTGGCCATTTCTTGGACAAGGATGGGAATTTTGTGATCCGAGAGGCGTTCCTAGCCTTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008178-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=FE(13.6=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAAACATGTTGCAGTCTGT
R:
CTAGGAACGCCTCTCGGATCA
Band lengths:
243-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]