RnoINT0044315 @ rn6
Intron Retention
Gene
ENSRNOG00000013291 | Cyp2c23
Description
cytochrome P450, family 2, subfamily c, polypeptide 23 [Source:RGD Symbol;Acc:620370]
Coordinates
chr1:263790497-263791538:-
Coord C1 exon
chr1:263791389-263791538
Coord A exon
chr1:263790658-263791388
Coord C2 exon
chr1:263790497-263790657
Length
731 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
3' ss Seq
ATTCTGCCCCCTTCCCGCAGCTC
3' ss Score
11.08
Exon sequences
Seq C1 exon
GACTCATTTTCAGTAATGGAGAGAGGTGGAAAGTCATGCGACGCTTCTCCCTCATGACTCTGAGGAACTTCGGAATGGGGAAGAGAAGCCTAGAGGAGAGGGTGCAGGAGGAAGCCCGGTGCCTTGTGGAGGAATTACAAAAAACAAAAG
Seq A exon
GTGAAACCCACACACAGCCTGTCCCTAATCCTTGTTCTTCCTCGAGGGGTCCCTTGGTCCAAGGTCTACCCAGGCTATGAAGACATCAGCCAGGACAGGAACATTATCCCGAAAGCTGTTAGTTAGGGCTCTGCAGTGCCTCAAGTGGATTCATGTTCTAACCATAGCGCTATACTAGATGTATGTTTGGACAAATTACTACATTTTTCTGAGATTCGTTTTCACTACTTGAAAAAAAAAATCAGGCTGCGAATCAAACCCGATAGAAAGATTTTAATGACACAGGGAAAACGTTTGCATAGTATCCAATGTATTATAAATGCTCTGTAAAATTGCTTATTGTCATTATTATAATATACATCTAATATCAAATGTGTTATAATTATAGTGTAATACTACATAGAGCGTATAGTACTCATGCTACTACAAGATCAATGGACTATGCTAACAGCATATGCACTGTATATGCTAATATATGTGTGTTAGTTAAGGTGACTAGAAGATGCTTACATCCTAATAAAGCAAGTTTCGAGGAATGAGCCATATGTGTATATTTGAAAGGAGGCCAGTTCTTGAAACCCTAGTTCAGGATGACAAGAATGCTCATCGTTAGGCACTGGAACTATAGCTCAGTGGGAGAGACTTGCCTGGCATGGGCAGGGCCCTGAGTTCGTTCCTTAGTCCTTGCAGTCAACAAGTCTCAGCGTTGAAATTCTGCCCCCTTCCCGCAG
Seq C2 exon
CTCAGCCCTTTGACCCCACCTTCATCCTGGCCTGTGCTCCCTGCAACGTGATCTGCTCCATTCTTTTCAACGATCGATTCCAGTACAACAACAAGACGTTCCTCAACCTTATGGATCTTTTAAATAAAAATTTTCAACAAGTGAACTCCGTGTGGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013291:ENSRNOT00000017840:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCATTTTCAGTAATGGAGAGAGGT
R:
CTGGCACCACACGGAGTTC
Band lengths:
310-1041
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]