GgaINT0040494 @ galGal4
Intron Retention
Gene
ENSGALG00000005795 | CYP2H1
Description
cytochrome P450 2H1 precursor [Source:RefSeq peptide;Acc:NP_001001616]
Coordinates
chr6:17134157-17135472:-
Coord C1 exon
chr6:17135323-17135472
Coord A exon
chr6:17134318-17135322
Coord C2 exon
chr6:17134157-17134317
Length
1005 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGA
5' ss Score
8.6
3' ss Seq
TTTTGTTGTTGTTGCTGCAGAGG
3' ss Score
7.55
Exon sequences
Seq C1 exon
GCATTGTGACCAGCAATGGGGAGACCTGGAGGCAACTGCGACGATTTGCCCTCACCACCCTGCGTGATTTTGGAATGGGGAAGAAGGGCATTGAGGAGCGAATCCAGGAGGAAGCTCATTTTCTGGTGGAGAGGATCAGGAAGACACACG
Seq A exon
GTAGGACACTGACGTGTGTCTGCTAGGAAACCTTGCGTATCTGCAATGAGACTGTAAGAAAATTCAGTCTGGATTCACAAATAACAATCCCTGCTACCAATCTGAGAAAATGTGCTCATCTCTACTGCTCTTTTCATTTCACTGATTCTGAATTGTATATGCCTCACTGTAAGCTTCCAAGTCTCGGTCGCTTTGTTACGCTGTATACTACATTCTATGCTTTACTATGTACTAAAAGGCTTCACAAGTAACTGAAAAGTCAGAAGCGTTTTTATACTTAATGCTAACAATAAATAGATAGGACTACTAACCTACTAGACTTACTTATGCTGAGCATTACTATGCTTACCACTTCTGACAAGATATCCGATGAGGTTTTGCTGGCGAGGAGTCGCGAGCAAGGCAGAGAAGGGCAGGCTCCAGTGCTGCACAGAAGAGGCTGATCCTTAACGTTACCATTTTCTCTTCCATCTTTTTTCCTTTAGAATTTTATAACTTTCCATCTTGATGATTCTCATCTTCCATACTTGAGATATACCTTACCGCGCTCTCCAGGTTCAACTTTCGTGTCTTTCATGGATCTAATCTCATTTTTTCTCACGCTTCCATAGTTATTTACTTAGAAAATTCTATAGCCGTGCTGTCAAAACTCTATTTTTGATCACAGGTATCTGAAGTTTCATTGGGTTATGGTGGAATTCTTCAGGCAGTCTCTAATAAACAGTCTGTGCTGCTGCAAGACGTGTGTCAGTTGAAGAGGAAACAAGTCACTCAGAACAGTGTTACAGAAAGAACAGGACAAAACAGGCGCTTAAACAATCCTTTCAGGAAAATCACTTAATTACAAGTAGAGAAGAACCATTTGGATAAGCCTCTCACTATCTTCCTAAAGGACTAGAAAAATCTGGGTCTCAAGTGAATGCAAAACTTCCTAGGAGGTATCAGAGGAGGAGATGATGACTAAAGTACTGACAGCAGTTACCTTTTTTGTTGTTGTTGCTGCAG
Seq C2 exon
AGGAACCTTTCAACCCTGGGAAGTTCTTAATCCATGCTGTTGCCAACATCATCTGCTCCATTGTATTTGGGGATCGGTTTGACTACGAGGACAAGAAATTTCTGGATTTAATTGAGATGCTGGAAGAAAATAACAAATACCAGAACAGAATGCAAACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005795:ENSGALT00000040063:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGTGACCAGCAATGGGGA
R:
CAGTGTTTGCATTCTGTTCTGGT
Band lengths:
310-1315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]