RnoINT0044363 @ rn6
Intron Retention
Gene
ENSRNOG00000012458 | Cyp2e1
Description
cytochrome P450, family 2, subfamily e, polypeptide 1 [Source:RGD Symbol;Acc:2475]
Coordinates
chr1:213516363-213516978:+
Coord C1 exon
chr1:213516363-213516512
Coord A exon
chr1:213516513-213516817
Coord C2 exon
chr1:213516818-213516978
Length
305 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
ACACTCTACCTATTTTCCAGGCC
3' ss Score
8.49
Exon sequences
Seq C1 exon
GGATTATTTTCAATAATGGGCCCACATGGAAGGATGTGCGGAGGTTTTCCCTAAGCATTCTCCGAGACTGGGGAATGGGGAAACAGGGTAATGAGGCCCGCATCCAAAGGGAGGCGCAATTCCTGGTGGAGGAGCTCAAAAAGACCAAAG
Seq A exon
GTTAGTATCTCAGCAGTCCAGAAGGATTGTGGGCAGGCTGAACACTGAACAACACGGAGGCAGTTGGCAGCTGGGGAAGGCAGAGGTCAAGTTGGTCCCCTGGCACTGCCTTCTCAATTTGAGTCCCAGCTCATTCTAGGAGAGCAAAAGTGGCTGCCAGGCATGACTGCTGTTCCCTTAGTAACCTTAAAAAGTAAAGACACTTGGAGGCTCCCACATTCACTGTGTCCTCAGTGCAAACTCAAGAAGACTAGAATGGCTAGAGAAGGCCATGGTGAGATACTCACACTCTACCTATTTTCCAG
Seq C2 exon
GCCAGCCTTTTGACCCCACATTTCTGATTGGCTGCGCACCCTGCAATGTCATTGCGGATATCCTCTTCAACAAACGTTTCGACTACAATGACAAGAAGTGTCTGAGGCTCATGAGTTTGTTCAATGAAAACTTCTACCTGCTGAGCACCCCCTGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012458:ENSRNOT00000016883:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTATTTTCAATAATGGGCCCACA
R:
CTGGATCCAGGGGGTGCTC
Band lengths:
311-616
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]