BtaINT0046191 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018365 | CYP2E1
Description
Bos taurus cytochrome P450, family 2, subfamily E, polypeptide 1 (CYP2E1), mRNA. [Source:RefSeq mRNA;Acc:NM_174530]
Coordinates
chr26:50556280-50556867:-
Coord C1 exon
chr26:50556718-50556867
Coord A exon
chr26:50556441-50556717
Coord C2 exon
chr26:50556280-50556440
Length
277 bp
Sequences
Splice sites
5' ss Seq
AGGGTGCGT
5' ss Score
7.22
3' ss Seq
TCAACCCCCCTGTTTTCCAGGCC
3' ss Score
8.6
Exon sequences
Seq C1 exon
GGATCATTTTCAACAATGGATCAACCTGGCGGGACACCCGACGGTTCTCGTTGACCACCCTCCGTGACTTAGGGATGGGAAAACAGGGCAATGAGCAGCGGATCCAGAGGGAGGCCCACTTCCTGCTGGAGGTGCTCAGGAAGACCCAGG
Seq A exon
GTGCGTACAGCCTGGGGCTCACACCCACCCTCCTCCAACGTCAGCCCACAGACACCACTTCACACGGCGGTTTCCCCTCTGGTCCTGGGGGTAAGGTGATCACCGAGCATGTAGCTGGTGTGTCCTGAATCACCGACAAGTAAGGAAAACCCAAGCGGCTCACACTTCCACCACATCCCAAGAATTCTCACGGTTCTAGAGTGTCTCCTCACAAGACTGGAAATGCCCCTCCTGCCGGGCCCACAGCACGCGCCCTCTCAACCCCCCTGTTTTCCAG
Seq C2 exon
GCCAGCCCTTTGACCCCACGTTTGTCGTCGGCTTTGCACCTTACAATGTCATCTCTGACATCCTCTTCCACAAACGCTTTGACTATAAAGATCAGACGAGCCTGAGGCTGATGAGTCTGTTCAACGAGAACTTCTACCTGCTCAGCAGCCCCTGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018365:ENSBTAT00000024437:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAATGGATCAACCTGGCGG
R:
GGATCCAGGGGCTGCTGA
Band lengths:
298-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]