RnoINT0044354 @ rn6
Intron Retention
Gene
ENSRNOG00000029128 | Cyp2d5
Description
cytochrome P450, family 2, subfamily d, polypeptide 5 [Source:RGD Symbol;Acc:628630]
Coordinates
chr7:123619621-123621102:-
Coord C1 exon
chr7:123620898-123621102
Coord A exon
chr7:123619793-123620897
Coord C2 exon
chr7:123619621-123619792
Length
1105 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GCTCTGTCCCTCTACTTCAGCTT
3' ss Score
8.08
Exon sequences
Seq C1 exon
CAGCAGCAGGGCAGTCATGGAGCTGCTGAATGGGACTGGCCTGTGGCCCATGGCCATATTCACAGTCATCTTCATATTACTGGTGGACCTGATGCACCGGCACCAGCGCTGGACTTCTCGCTACCCTCCAGGCCCTGTGCCGTGGCCTGTGCTGGGCAACCTGCTGCAGGTGGACCCCAGTAACATGCCATACAGCATGTACAAG
Seq A exon
GTGAGGGACTTAGTGGTGGATGGTGCATGGGGTTATGGTGTCCAAAGTGGCAAATAGTGGGGGTCGAGCCACAAGTCAGACAGGGATCCGGGTCCCCAAGAGGGGGGAGGCTTAGCAATGTTTTTGTGGCAGCCACTGGAAATTTCTAGGGCAAAGTCTCGGGGGACAAAGTCCAGGAGGTGAAGGGGGATGGGACAGCAGTGTTCAGTCTATTTGGACAGGACAGCAGCCATAGAGGTCCCAGTTCCATTAGGATCCTTTCAGAGAGGAGGTGCTGTGAGGTCTACTACACCGTGCCAGTCAGGACCCTGAGCAGAGAGAAGGCTTGTGGCTGCCTGAATCTCTTGGTACTGTGTGTTCTATGGTCTCCCTGCCCATCTCAGTGAATCAGAGTTTCTTCAAGTGTGCTGAGACGCTAAGATGTCCCAGAATATTTTTCTTGCTCTGGCAAGGTCACAGCTGGGGTGTCCCATCTACTGTGATTCCTTTGCTGCACTTAAAGGGTAAGAGGCCACAGTGGTAGGCATCCTCAGGCTGGGGATGAAACTCACTGAAGAACATTTTTCCAGGATATATGAGGACCAAGGTATGACAATAAGCAATACATACACACAAATATGCATATATAAACACACACACTCACACACACACACGGACACACCCAGACACATGTACATACACATATACACATACACTCACTTATACAAACACATACACACACATGGACACACATACACACGGACACACATACACACGGACACACATACACACACACACACACATGGACACACACAGAGACAAACATACACAAGGACACACCCAAACACACACACAATCACTTTCACATATACAAACATCCCTGGGTAAACATACACAAAATGCACACACACACACACACATACACACATATACACACATATTCACATTCACATATACGAACATGCATGGGTAAACATACACAAAACAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTGCCTGTGCACACTCACACTTTGACAATGTTGTGCACTGAGCCTGGTTCTATGATCTGTCAGGACCTCCCCTTCCTATGTGCTCTGTCCCTCTACTTCAG
Seq C2 exon
CTTCAACACCGCTATGGTGACGTGTTCAGCCTGCAGATGGGTTGGAAGCCCATGGTCATTGTCAACAGACTGAAAGCGGTGCAGGAAGTGCTGGTGACTCATGGAGAGGACACTGCTGACCGCCCTCCAGTGCCCATCTTTAAGTGCCTGGGTGTGAAGCCCAGATCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029128:ENSRNOT00000046024:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.6=41.3)
A:
NA
C2:
PF0006717=p450=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCATGGAGCTGCTGAAT
R:
GCTTCACACCCAGGCACTTAA
Band lengths:
355-1460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]