RnoINT0044360 @ rn6
Intron Retention
Gene
ENSRNOG00000029128 | Cyp2d5
Description
cytochrome P450, family 2, subfamily d, polypeptide 5 [Source:RGD Symbol;Acc:628630]
Coordinates
chr7:123616946-123617656:-
Coord C1 exon
chr7:123617469-123617656
Coord A exon
chr7:123617088-123617468
Coord C2 exon
chr7:123616946-123617087
Length
381 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TGCCCTGTGCCTTCTGCCAGGGG
3' ss Score
9.31
Exon sequences
Seq C1 exon
GCAGAGTCCAACAAGAGATTGATGAGGTCATAGGGCAGGTGCGGTGTCCAGAGATGACAGACCAGGCCCACATGCCCTACACCAATGCTGTCATCCATGAGGTACAGCGCTTTGGGGACATTGCTCCATTGAATTTGCCACGCATCACGAGTTGTGACATTGAAGTGCAGGACTTCGTCATCCCCAAG
Seq A exon
GTAGGCATGAACCTGTCACAATTCCATCAAGACCCACTATCAAACAAGGACAGGAGAGCTCAAGACCACTGCATCCTATTCCTAATGTGCTCACAAGAACCAGAGTGCATGCAGGCTGCAGCCATGGAGTCTTCAAACAAAGAGAATTGTCAAACGAAAATGTCCAAAGTACACTCGGAGTGCTGCACACAGGGATAATGGCCAGGGTGACACCCATGGGAGTTCTGTTACAGGGTCCTCGAAGGTGCTGGGAGGCTCTGTGGTTGAAGTTGAATGAGGGAACCCAGTGTGTGCAGGAAAGAAGTTATGCGTGTGATCCTGGGCACCAGGGTCTCGGCAGTGCCACCCCTGTCCATCTTCATGCCCTGTGCCTTCTGCCAG
Seq C2 exon
GGGACGACCCTCATCACCAACCTGTCGTCCGTGCTGAAGGATGAGACCGTCTGGGAGAAGCCCCTCCGCTTCCACCCTGAACACTTCCTGGATGCCCAGGGCAACTTTGTGAAGCATGAGGCCTTCATGCCATTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029128:ENSRNOT00000046024:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.4=100)
A:
NA
C2:
PF0006717=p450=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGTCCAACAAGAGATTGA
R:
TGCTGAGAATGGCATGAAGGC
Band lengths:
329-710
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]