RnoINT0044386 @ rn6
Intron Retention
Gene
ENSRNOG00000042224 | Cyp2j10
Description
cytochrome P450, family 2, subfamily j, polypeptide 10 [Source:RGD Symbol;Acc:1563215]
Coordinates
chr5:115217662-115222084:-
Coord C1 exon
chr5:115221866-115222084
Coord A exon
chr5:115217825-115221865
Coord C2 exon
chr5:115217662-115217824
Length
4041 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
ACTGCTGTAATATTTTTCAGTTT
3' ss Score
8.32
Exon sequences
Seq C1 exon
ATATCAGCCATGCTTGTCACAGCGGGTTCCCTACTAGGGGCCATTTGGACCGTGCTCCATCTCCGGATTTTGCTGCTGGCTGCTGTCACCTTTCTGTTCCTGGCTGATTTCCTCAAACACCGGCGCCCCAAGAACTACCCGCCAGGGCCTTGGCGCCTGCCCTTAGTGGGTTGCTTGTTCCATTTGGATCCTAAACAGCCACACCTATCCCTTCAGCAG
Seq A exon
GTAGGAAGAGGCAACAGTGTCTGGCTGTGTCCTGGGACTGGATATTGGCACTGGAAACTGGAGGACCTGGCTGTAGGCTAACACTGACAGCCCTCTAACCCAGAGATAAGGTGTTCAGATTACAAACACTTGTAGATTTTCCTGTTATCTGTCGACGAAAGATTCCTAGTGAGATTTTTATGGACAGAGAACATATTCTGATTTTAATTCTTGTAAATATGTCAGGGTAGATTTGACGATATGATAATCTATCTTCATAAATACATCATGGTGGTTTAAGAAATGGGATGTCTCATATGTTGGTTACATACCCGTCCAGTTTTGTTTTTTTTTAAAGTATGTTCCTCTCTTGACCTGTGTACATATCATTTCTCTGATTTGTCTTTTTGAGCCTAGTTTGATCCTTCTGCGCCTTTGCAGACTGCTCACTTACTGACTTTATCAACACCAGAGAAAGATGTCTCCAGCTTCACTAGGAGTCGTCTGTTTTTCCATTCAGTTCTTGAACCCCCTCCCCACCCCCGCCCTGTATTGGAAAGACTGTTATGTATACAGAGTACACAAGTCCTTATGCTCTATGACCCTCTTTTCTCCCAATGTTCCTTATTATCTACAGTGATCTTCTCTGCTTAGATAGTGAACACTCCAGCCTTGTGTGATTATCCCTGTCACTTTCCAGTACCTGTGAAGAGTGGTTATGTCTGATTATTTTTTACCAATTGAGGCTTTCAGCCCATATGTTTTCCCTCTGTTTCCCGACCTCTTTTTTCTTTTATTCTGCCTTCCCTGTGTGTTCCTTGAATACTTTCCAAATAATTGCCTCTCTATTCCTCTTAGCTCTTTCATTGTATCTCTTGTATATCTTTGTATCACCCTCCCGGCAGGCATCTACTCAGTTATTCAATGCACACATGCAGCTGAGACTTTGCTAACACTATTTCAAGGCAAACAACTACAAATTGTGGAGGACCTTGTCTCCCCTCTATAGCACAGCTCTCTAGGTTGTTGTCTAAACACACACACACACACACACACACACACACACACACACACACACGAGAACCACATCAGACACTAACCTGGGTCTTCAGTGCCCTGTGCAGCTGGAACTTAAAGGCAGAAGTGTCTCTTGTCTTTGCTCCTTACTCTTCCTCCTACAGATCCATCGTTTTGGGGTGGTTTTTTTGTTTGTTTGTTTGTTGTTTTTTGTTTTTTGTTTTGTTTGTTTGGCTCTATTGTTTATTTGTTTGTTTGTTTGCCTTTCGTGTTCAGTTTCCAATCTGACCTTCAGCACTTCCTTTCCCTGTTTTTTCAGAGAGAGGCTGTGGGAGAAGGAGATTTCTTAGCTTTGCCCTACCTCAGAATGCACTCCTCACCTCATTCCCACACTGTTTTTCTCCTAATTTTGACAACTGATTACCAGTCTGCAGCACTTAATGGTTTTAGATGTCCTCCCACTTAATTCTGTACTTTGTAGTTTCTGGTGAGAAATAATTTCCAATTTCCCCTTAAGTGGAAGGATCCCACCATCTGCTTTCAATATTTTTTCCTTTGCTTTAGCTTTCAATTTGATTATGATGTTTATTTGTTTTTTGACTTCTTTGAGGATTTTATGCTGTTTGCATCTTTTACATAGTTTTTTATTTTGCCAAATTGAGAAGTTTTAGCTATTCACATATTTCATGGTCTCCATCCCCCTTCCCCCATATACACAGGCACACTATTTTTCTGGAAGAGTTGTTGCCTCTGTGTGCCTCTTGTTTTTCTGGGACAATGGGAGAGAGAGAGAGAGAGTAAAGAAGTAAAGGCTGGCCATGAGCAAGTAGAGAGAAGGGGGAAGGGAATGGAGAGAGGGGGGAAAGGGAATAGGGAGAGAGTGAGAGTAAGAAAGGAAGAGCAAGAGAGCAAGAGAGTGAGGAAGGGGCAAGCTGCCCCTTTTAAAGTGAGTCAGGCACGCCTGGCTTTTGCCAGGTAATTGTGGAATGGGGAGCTCAGACAAAATGCTAAAGAAACCAAGTTCAGATTACACTTCTTAGGTTTAAGAACTTAAATCAGTGAAGTCTTTCAAGGTCACATATATGGCCCAGTGCCATGTCTCACTAATCTTAAGTGTCTTACTTTTCTTTATTTGGAACATTGACTCTGCTGAATCTTGCTGTTTGAACTTTGCAGGCTATTGCAATGGTTGCACTGCTCGTCTGCTATTGATTTTGCTACGTCTTATACCTCCCATTTCAGTCTGTTGCTATTTTTCTATGTCCAGTTTTTATTTTATTTATCATTCTGTACTTTATTATTTTAATCACTTTAGAACTTCTTTTGCATGACTAACAACGTTGCACAATGGAAAGTACGCTCTGCATTATAATGTCTTCTGGGGGGGCCCTCTGCAGCTTTTAATCCGCAGGAAGCAATTGCAGACAGATCTGGCACACTTGAGAGTCAAAGGCTAGAAGTCCAGGAAATTAGCTGACCTCTCTATCTTGATGGATGGTAAGATAAAAGTGACTGTTTCATATTTGAGCTAGGAATATACATGGGCAGAGAGCTTGTACTATGGAAAGAAGACATTCATTGCCTTTACTACCTTGTCTTGGAACAGTGGTTCTCAACTTTCCTTATGCTCTGATCCTATAACAGTTTCTTATATTGTGGTGATGTCCAAGAATAACATTTTTTGGTTGCTACTTCATAATTGTTTTGATGGTCTTAGGCGACCACTGTGAAAGGTCATAGCCCACAGGTTGAGAACCACTGTCTTAGATGCTGTTTCTCCCTCAAGAATAAGTATGAGATCTGTTGTTGTAAAAATATAAAAGTTAATAATTATAGTTGTCTTTTACCCCGCTAGGTCTGCACCGAGGTGTCCCAAGATATCTGCTAGATATCTGGGTGGAAACACATCCCAGCCGCACACTTTCCTACATTCAAATACTCACATAAAAGAACACACAACACAATAATCTTTGACCCATTTGGGAAGATATAATTGCCCACTTAAACATACAAAGCCCAGTACCATCCATCCCTTAAGAACATTGATAACAACCTGTAAATACACAGAGCAGAATCTTAACATCACCTGCAATGGCTTCTCCCCCTCTCCTCTCTCTCTCCTCCTTTCTGTCCTAGTCTCTTCCTCTTCCTTCAAACGTCTCTCCCGCCCATCCTTCCTTCTCCTCCAATGATAGGCCTCCTTCTATCCTGTACCTGCCCCTCACCTGTACTTTACAAATTCAATGGGGAGGTGGTTCTGGTGAAGTCACCTGAGTTCTGAGTACTGATTAGGCAGCTGTCCTTGGGGCAATGGAATTAGCATCAAAATACAGATAACTTCAGGGCAAACCACAACAGAGATCCACCGTGGTACTCCTTACCAGTTAAGACCCTCCTAAATTAAACCAAATTTTCACTTATTCCCAGAACTTGTCCGTCACTACTATCCATAGTCAATAATCTTTCTTGAAAGGCTTAAAAATCTCAAGGAGACATTCATGAAGATAAAGTTAAAAACTGATGTACATTTCTATGTGTACTTCACTTACATCTTCTTGAAGAAATGACATAGAGTTAGTTACTCAGAAATCTTCTCTGCATAGCAGCTGTTTAAAGGCATTCTCTGGCTAAACAGGGATGTTTATAAAACTATACCAAGCATGCACAGACCTTCCTTGACCTCTGGGCTGTCGTGCAAACTGTAATCTTGCTTTCATTAGAATTCAAAATGCCTCAGTTAGAGAATTCGCTTATTTGTTGCTACCCATATTTCATGCCTTCTCCTAGTGACATTGGGTAGCTGCATACCTAATCCAGACTTGCTAAATTTATTGGGGTTTTCTATAGGGAAATTTGTATTCTTAGTGTGTATCAAAATTGAGCTTAAAGCATTTTGAGTAAAAGTTTCTAAACATTTCTACAAAGGAAGATGCTTGCTTCCCTGTCCTTCACAGTTCCTACATTAGTCCCAATGGCTTTATACATATTTGTCATATCTGGACACACAGACATGGGCTAAGTTGTGACTGCTGTAATATTTTTCAG
Seq C2 exon
TTTGTGAAGAAATATGGGAATGTTTTAAGCCTGGATTTTGCTAACATTCCTTCAGTGGTTGTAACTGGCATGCCCTTAATCAAAGAAATCTTTACTCAAATGGAGCACAATTTTTTGAATCGCCCTGTCACTCTTCTCCGAAAACATCTCTTTAACAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042224:ENSRNOT00000012503:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=37.1)
A:
NA
C2:
PF0006717=p450=FE(11.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]