RnoINT0044406 @ rn6
Intron Retention
Gene
ENSRNOG00000031004 | Cyp2j4
Description
cytochrome P450, family 2, subfamily j, polypeptide 4 [Source:RGD Symbol;Acc:620007]
Coordinates
chr5:119552254-119555166:-
Coord C1 exon
chr5:119555028-119555166
Coord A exon
chr5:119552442-119555027
Coord C2 exon
chr5:119552254-119552441
Length
2586 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
ACTCTCCGGTTTACTTTTAGAAA
3' ss Score
8.75
Exon sequences
Seq C1 exon
TACCCAGAGAAGACTACAAGTTTCAATGAAGAAAACCTCATCTGCAGCACCCTGGACCTCTTCTTTGCGGGAACAGAGACAACATCCACTACACTGCGCTGGGCTCTGCTCTACATGGCCCTCTACGCAGAAGTGCAAG
Seq A exon
GTGTGTATGTACTGACGGCACCTGACAAAGCCAAGATCTGCATTTGGAAGCCTTGGCTTAGACAGGGCCAGAGATATCATGGTGGAGTGGAAGGAGGTGGCATAGCTGTGAGAAAATGTGCACTAGGGAATGGGCTTGCCTTCTGCATGTTCTGTCAGGACTGAGATGGGTCCTAAGGGTGCAGACATGTATAGTGTGCACTCACTCATCTCCTTCTTCTCTTTATAGTAGGTCTCTCATAATTTGCTTTGCATTTTGTCTAAACACTTTATTTTGGTACTCTTTAAACTGTGGTAAAACCTTTCTGTCTTTTCAGCTTCAGATCCACCAAGCCTCTATGGTGCCTTTCCTACACTCTATATCCTCTCTTGATATGGTCCTTATTTGTGCCTCTAAACACAACTTTACTCAACCACCAGTATTCTGTCACAATTTTTCCCCATTCTACCAGAATTGTCTCAAGTATTACCTACCCATGTCATTTCAAATTCCTCTATGAATTTGATGACTTGAAAATAACTGTCATTCTTTTACGTCCAGAGACAACTGGATACTCCTTCATGGTTCTGCTTAGCACACAGTGTTTCTTTCTCCACCGACTGGCATCTGTCAGGGCAAGTGGTCCATCCTATCATTTTTTGAATTGGATATTTTATTTATTTGCATTTCAAATGTTACCCCCATACCAGGTTTCCCTTCCAGAAACCCCCTATCCCATCCACACTCCACCTATTTCTGTGAGGGTGGTCCTCACACCCCCCCCCACTACATGCCCGGGACATTCCCATAAAGTGGGGCATTGAACTTTCAAAGTACTAGGGGCTTCTCCTCCCATTGATGCCCAACAAGGCCCATCCTCTGCTATATATGTGGCTGGAGCCATGGGTCACACCATGTGAATTCTTTGGTTGGTGGTTTAGTCCCTGGGAGCTCTGGGGGGTCTGGTTGGTTGATATTGTTGTTCTTCCTAAGGGGCTACAAACCCCTTCAGCTCCTTCAGTCCTTTTTCTAACTCCTCCATGGGGTCCCCAAGCTTAGCCCAATGGTTGGCTGCATGCATCCACATCTGTATTGGTCAGGCTCTGGCAGAGCCTCTCATGAGACAACTATATCAGGTCCCTGTCAGGAAGCACTTCTTGGCATTTGCAATAGTATCTGGGTTTGGTGTCTATGTATGGGATGGATCCCCAGGTGGGGCAGTCTCTCCTCTACACATTGTCTCTGTATTTCCTTTAGACAGGAGCAATTCTGGGTTAAAATTTGGACATGAGTGTGTGGCCCCATCCCCCAGCCTTGCCTAACTTCTGGATATAGTCTATACAGGTTCTCCCTCCCATTTGTTGGTTAGATTTCACCTAGTCTTATCCCCATTGGGTCCTGGGAGCCTTTTGCTTTCCTGGCATCTGGGACTTGCTGGTGGCTACCATCAGCTTTCCATCCCCCACTGGTACACATCTCTGTTCAAATTCCTGATGATCTGCATATCATCCCTGTCTCCTCCCATACCTGATCCTGCCCCTCTTGTTCCCTGCTCCCCCTCCTCTCTTCCCCCAAGTCTCTCCCATCCTCTAACTCTGGTGAGTATTTTGTTCCCCTTCCTAAGAAGGACTGAAGTATCCATACTTTGGTTTTCCTTCTTCTTGAGCTTCATATGGCCTGTGAGTTGTATCTTGGATATTCTGAGCTTTTGGGCTAATATACACTTTATCAGTGAGTGCATACTGTGTGTGTTCTTTTGTGATTTGGTTACCTCATGCAGGATGATATTTTCTAGTTCCATCAATTTGCTGAAGAATTCCATAAAGTCATTATTTTAATAGCTGAATAGTACTCCATTGTGTAGATGTACCACATTTTCTGTATCCATTCCTCTATTGAAGGACATCTGAGTTGTTTCCAGCTTCTGGCTATTATAAATAACATTGATAGGAACATAGTGGAGCACGTGTCCTTGATATACATTGGAGCATCTTTTGGGTAAATGCCCAGGATTAGTATCACTGGGTGCTCAGGTAGTACTATGTCCAGTTTTCTGAGAAACCGCAAGACTGATTTGCACAGTGTTTGTACCAGCTTGCAATCTCACCACCAATGGAGGAGTGTTCCTCTTTCTCCAGATCCTTGCCAGCATCTACTCTCACCTGATCTTAGCCATTGTGACTGATGTGAGGTGGAATCTCAGTTTGTTTTAATTTGCATTTCTCTGACGACTAAGTACTTTAAGACTATGAAACATAAATTTGAGTTGTTTATGATCCACTTAGTGTAATGAAGGTATTCATGCCACACTATGAACACTCTGAGATTAGCAATGCTGATGACAGCTACTCAGTTCAGGATGTATGGAAAGCTATAATCACGTTGTAGGCTCAAAGAGAGTTATAGAGGGTTTTGTTGTTGTTGTTGTTTGTTTGTTTGTTTGTTTGTTTTTAATTAAAGCAATTCTTTGAAGGGTTAAGGAAATATTTCTTTACAGCCAGGACACTAAAATTAAATAAAGACTGATAGGATCTCAGAGACAACTTGCATATTAATAGAAGAAATCATTAAATTAAAAAATTAACAGACTCTCCGGTTTACTTTTAG
Seq C2 exon
AAAAAGTACAGGCAGAGATTGACAGAGTCATTGGCCAGAAGAGGGCAGCAAGCCTGGCCGATCGAGAATCCATGCCCTATACCAATGCCGTCATCCATGAGGTGCAGAGGATGGGCAACATCATCCCCCTGAATGTTCCCAGGGAAGTAGCAATGGATACCACTTTGAATGGATTCCACCTGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031004:ENSRNOT00000012977:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.7=100)
A:
NA
C2:
PF0006717=p450=FE(14.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]