BtaINT0002935 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:M0QW09]
Coordinates
chr3:86538030-86538694:+
Coord C1 exon
chr3:86538030-86538171
Coord A exon
chr3:86538172-86538506
Coord C2 exon
chr3:86538507-86538694
Length
335 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
AACCTCCTCTTATTTTCCAGAAA
3' ss Score
9.52
Exon sequences
Seq C1 exon
CATAAGGGCAATGCTACTTCATGTTTCCATGAAGAAAACCTTATCTATAATACCCTGGACCTCTTCTTTGCTGGAACAGAGACAACTTCAACCACCTTGCAGTGGGGACTGCTCTACATGGCCTTGTATCCTGAAATCCAAG
Seq A exon
GTGAGCACATCAGAGGGTAGGCCTGGGTCAGGTCAGAATACTTCCCTAAATTAGTTCATGTCAATCTCAGTATTCCTAAAGAGTGCTATTTGATTTATCCTCACTATTAAGAAGAGGAACCCAAGGCTCAAAGAGCTTCAGAAACTCACAGCAGGAATGTTGTCCAGCAAGAATTTGCCACCAGATTTGTCTCACACCAGGGTCTACTTCCTACTCATATAACCTCCCTGAAGAGCTAGTCTGGAGAACCTAAAATAGCCATTTTGATCCTGGTTATTCCATTCCTTAGCTTAATCAGGAATACTAGAATAATACAACCTCCTCTTATTTTCCAG
Seq C2 exon
AAAAAGTCCAAGCTGAGATTGATAGGGTGCTTGGCCAATCTCAGAAACCAAGCATGGCCGCGCGAGAGTCCATGCCCTACACCAACGCTGTCATCCACGAGGTGCTGCGAATGGGGAACATCCTCCCTCTGAACGTGCCCCGGGAGGTGACAGTGGACACCGTCCTGGCTGGATACCGCCTGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013693:ENSBTAT00000018202:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCAATGCTACTTCATGTT
R:
CTTGGGCAGGCGGTATCCAG
Band lengths:
326-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]