RnoINT0044392 @ rn6
Intron Retention
Gene
ENSRNOG00000042224 | Cyp2j10
Description
cytochrome P450, family 2, subfamily j, polypeptide 10 [Source:RGD Symbol;Acc:1563215]
Coordinates
chr5:115204771-115208423:-
Coord C1 exon
chr5:115208282-115208423
Coord A exon
chr5:115204959-115208281
Coord C2 exon
chr5:115204771-115204958
Length
3323 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CCTGTTTTGTTTTGTCCTAGAAA
3' ss Score
9.5
Exon sequences
Seq C1 exon
TACCCAGACAAGACTACTACAAGTTTCAATGAAGAAAACCTCATCTGCAGTACTTTGGATCTTTTCTTTGCTGGTACAGAGACAACATCCACTACACTGCGCTGGGCTCTGCTCTGCATGGCCCTGTACCCAGAAGTCCAAG
Seq A exon
GTGAGTGTGTGCTGACTGCACGTAGACAAAGTGGAGTGATGCTTCTACAATCTGTGGTTCAAATGGGACTAGAAGATGGCATGGAGGGGTAGGAAAAGGTAGAGTACCTGGGAGGTAATGTGCACTTGGAAAGGGGCACATTCTCCACATGTTTGATCAGGATTGTGGTGGGTCCATCTCATAAAGAATTGAACTTAGAACAAAGCAAAGAAGAGAAGTGACAATGTGGTAAGTTCCAGCAAAGAGTCACTTTACCTCAGAGTATCCATAGATTCCCTCCTTTGTTTTTAACAACACATTCCTATTTGCCCTGGAAATGCCTTAGTCTGGTTTCTGGAGTCATGTGATGCGCTTCTCTTTGCCCATTCTCCACCCTCCCCACCCTGCGTGGTAGCATCCCTGTGTTGCCTGTCCGCATTCCTGTGTTGCCTGTCCGCATCCCTGTGTTGCCTGTCCGCATTCCTGTGTTGCCTGTACGCATTCCTGTGTTGCCTGTCCGCATTCCTGTGTTGCCTGTCCTATCTTGCTGCTCTCCTTATTCCTGCATCTAAGTCATGACATTGGGTCTTCCATCTACCAACAATGTACTGTTCCAATTTCTGCCAACTCTAGAAGAATTTTGCAAGGCTCCACCTGTCTAAGGTGTTTCCCATTTCTCCAGGAATTTACTGACTGGGGAATTGTCACTTTCTTCCTCCAGAGAGGAATAATGCTCCTCCATCACTGAGCTTTATATATAACTTTAACATCACTTCGCTGCCTGTTGTCCATGACAAAGAATTATCTGTCTCACAATTTCTCTTCCTCTACATATAGAAGATTTTAACAGGTGCTTGTTAGGATCGCTTTTTTATTCCATGAATCATTTCCTATTTTAAATTGTAGCTCACAGTTTATTCATTTATAAAGTCAATTTAGTACATTTTGAAAACCAAACAGAGCAAGAGTTCTGCCCATATGATGAAGTCAAATTTGCCCATAATCTTTATTTCATCTTTGGGTGAGTGACTCTCTGTGCATGTATGTATGAGTTTATGTGCATATGCATGTTCAGGCCACAAGCCAAGTTCTTCAGAAGCATAGTTCACTTAAAAAAAAAAAGATAAGTTCTTTCATTAACCTGGAATTCAACAAATAACCATTGAGTCCCAGGGGTCCGCTTCTCTCTGCATCTCCAGCATATTAGAACTACAAGTTTTTGCCATCACAACTGACTTTTGTATATAGCTTCTAGGGACCAGACTTAGGTTCTCGTGCTTGCAAAGGAAGAATTTTTACCAACTGAGCTATCTCCCCAGAGTAACCTTTTTTTATGAATATAAAATGTGTACTTAGTATGTATATATCTTTACCTATTATATATTTTGAATCACCATTTAAAATGAATTTTTTTCTGAATGTTATACAACTTTCTTGTTGTATTTTAAGGGATGTGTGAGAATTCCATGGCACAAGTATAGGAGTCATAGCACAGCCTGCAGGAATCAATTGTCTCTTTCACCATGTAGACCCTAAGGTTTAACTCAGGTCACTAGGTAATTCAACACTGTCAGCCGTCTAGCTAGCCTAAGACCACATTTTTTTTACATTTAAAATCAACTCACTTAGATAAAACATTTGACTCCTGAAAATAAGATGCCAACATATTTAAATAATACAATTACAACCATGTTCATTTTACAACATGCACAATAGTCAAGAGATGGTAAAAAACAGAGAACTCATGGGCCAGGAATAAATAAAGTATGAAATATATATGGATCAAAAGAAAATTAATCAGACATAAGAAGTTCATTTTAATTTTTTGATTTATGTAATGTATATGAGTGCTTCACCTGAGTATGTATAATACATGCTCGTCTTGTACCTAAAGAAGTCAGAAAAAAAATCAGAATCCCTGGAACTCTAGTTACAGATGGCTGTGAGCCATCATATGTGTGCTGGGAACCAAGCACAGGTCCTCTGAAGAAGCAAGAAGTGATCTTAACCACTGAGTCACGCACCATCTTCTCCAGAAAATGAAGTCTGATGCCCCATTAATTCAGGGAATTATTCTAACTTAAAAAATATGGTTCCCAAATTACAAATACTCTACTATCTAATGGAAATAATAGTCAAATTGTATACCACATAGAATTAGAATACACAGAGAGGGAAAACATTATTTGTAACATGGACAGAGACCTTTTCACAAAATAAAGTTTGAGCAATAACATGTACAACAACATGAACATATTAAATGCTGGTGAATTACTGAGGTAAAAGTGGTGAGAAAAGTGGCTGTGGTTGGTGGTCCATACCATTAATCTCAATACTTGACAGATTTGAAACAGTTCAAGATGACCCTGGCCATATAGATGAAATCCTGCCTCAAAAGCCATCATGGTAATAGCAATAAATTTTACATTATATAAAATTTGTATGAAATTAATTTTCACAAGTAAAGTAATAGTAAAGGGCACAAAGTTCCAAGTTCATTTAAAATGAATTGTAGAACCAGACAATCAAACAAAATTAGTTCCACCTCTATTACTCTTGAGAAAGAGGAGTCATATTGATAGACAGCTTGCAGAATCAATCACTTATTACTGTAAACGTTTGTGTTACTCTCAAAACAGCCTCAAGGTGAAGCAGACTAATCCCAAAAGAAAACTGAATCTCAAAGAATGTAAGAATCTTCACCAGGATGTGTCTAGCAAAACACTGCTGTCCACAGACCACAGACATATATCTCCTTAGATATTAGACTTCAAAGATGTGCTGCAGTCTGAACGTTTGTGTCCTCCTTGCCAAACTCATATTCTACTCTAATCTCAATGTGATTATTCAGGAGATTGGTGCCTTTCCAAAAGAAGTACCAGAGAGATTCCTTTTTCCTTGGTAGCATGAGGATACAACACGTATGAGACAGGAAGTTGTTGTCTACCAGGCAAGGAAACTTACAGTGTCTTGATCTGTGGAGTTCCAAGCTCTAGAACTACAAAGAATACATTCATGCTGTTTTGTAACCCACTCAGTGAACGGTGCTTGTTTGTAGGAACCTGACAAGATAGTGCTGTGTGCATACCTAAGATACTTAGTTCAGATTTTATATATTTTATATATTTTATGATTACATTGTCAGCTCGAAGGAAGTTATTGAATTGACAGTTTTATTTTTAAAAAAGCTATCTGAAGGTTTGAGGAAACTTTTATTTCTTTATATCTTGGATGCTAAGATGAAATAAAAGCAGATGAGGTCTCAGAGACAGCTACTATATTGTTAGAAAAAAAAGCATTGAACTTTTAAAATTAATAGAATTTCCTGTTTTGTTTTGTCCTAG
Seq C2 exon
AAAAAATGCAGGCTGAGATTGACAGAGTGATTGGCCAAGGAAGACAGCCAAACCTGGCAGACCGAGACTCCATGCCCTACACCAACGCCGTCATTCACGAGGTGCAGAGAATAGGCAACATCATCCCCTTTAATGTTCCCAGGGAAGTGGCAGTTGACACCTATTTGGCTGGATTTAACTTGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042224:ENSRNOT00000012503:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.159
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.4=100)
A:
NA
C2:
PF0006717=p450=FE(13.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]