BtaINT0007293 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N3N3]
Coordinates
chr3:86413152-86420702:+
Coord C1 exon
chr3:86413152-86413293
Coord A exon
chr3:86413294-86420514
Coord C2 exon
chr3:86420515-86420702
Length
7221 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
AATCTTCTGTACTTTTCCAGAGA
3' ss Score
7.91
Exon sequences
Seq C1 exon
CATAAGGGTAATGCTGCTTCAAGTTTCCATGAAGAAAACCTTATCTACAATACCCTGGACCTCTTCTTTGCTGGAACAGAGACAACTTCAACCACCTTGCGCTGGGGTCTGCTCTACATGGCCCTGTACCCTGAAATCCAAG
Seq A exon
GTGAGCACGTCAGTGGGTGGGCCTCGGCTGGGTCAGAATGGGGCCTCCTCAAGAATATACAGTGGGGCAAAGAAGGTCTCTTCAGTCAGTGCTTCTGGGAAAACTGGACAGCTGTGTGTAAAAGAATGACATTACAACACTTCCTAACGCCATACACAAGGATAAATCCAAAATGTACTAAAGACCTAAATGTAAGACCAGAAACTATAAAACTCTTAGAAGAAAACATAGGCAGAACACTCTATGACATAAATCACAACAAGATCCTCTATGACACACCTCCTAGAATAATGGAAATCAAAACAAAAATTTTAAAGTGGGACCTAATTAAACTTAAAAGCTTTTGCACAGCAAAGGAAACTATAAACAAGGTGAAAAGACAACCCTCAGGATGGGAAAAAATAATAGCAAATGAAACAACTGACAAAACATTAATTTCAAAAATATGTAAGCAGCTCATACAAATCAATAACAGAAAAGCAAAAACCCAATCAAAAAGTTGGCAAAAGACCTAAACAGACATTTTTCCAAAGAAGACACACAGATGGCTAACAACTACATGAAAAGATGGTCAACATCACTCATTATTAGAGAAATGCAAATCAAAACTATGATGAGATATCACCTCACACTGGTCAGAATGGCCCTCATTGAAAAATCTACAAACTATAAAAGCTGGAGAGGGTGTAGAGAAAAGGGAACCCTCTTGTGCTGTTGGTGGGAATGTAAACTGATACAACCACTATGGAGAACAGTATGGACACTCCTTAAAAAACTAGGAATAAAACCACCGTATGACCAGCAGTCCCATCACTAGGCATATACCCTGGGGAAACCAAAATTGAACAAGACACATGTACACCAGGGTTCACTGCAGTTATATTACAACAGCTAGGACATGGAAGCAACCTAGATGTCCATCAACAGATGAATAGATAAAGAAGCCGTGGTACATATATATAATGAAATATTACTCAGCCATAAAAAGGAATGCATTTGAGTCAGTCCTAATGAGGTGGGTGAACCTAAAGCCTATTATACAGAGTGAAGTAAGTCAGAAAGAGAAAAATATCATATACTAATGCACAGATATGGAATTGGGAAACCAGATGGTTCTGATGAACCTATTTGGAGAACAGCAGTGGAGACACAGACATTGAGAACAGATTATGGGCATGGCTGGGAGGGGAGGAAGGAGAGGGTGGGAGATACGGAGAGAGTAACATGGAAATATAGAATACCATATGAAAATACATACCCAATGTGAATTTGCAGCAAGACACAGGAAACGCAAACTGGGGCTGGGTAACAGCCTAGACGGGTGGGACGGGAGGCAAGTGGGAGGGATGTTCAGGTGTGGGGGGACATGGGTAAACCTATGGCTAATTCATGTTGATGTTTGGTAGATACCAACACAATACTATAAAGCAATTATCCTTCAGTTAAAAATAAATCATTTTTTTAAAGGAAAAAAGAAAATAAGAATGGGGCCTCCTGGAGCACGGTCCAAAAGAAAGGCCAGAGGATAGTATGGTAGGATGGAGAGATAGGTAGGACAGGTGGACTTGAACGGGCGCCTTCTTCAGTTTTCTGCCAGAATTGGGATGGGTCCACATTACACAGATATAACAGAGAGCCCCTGCCCTCAGCAAACTCACTGTCCAGTGGGGAAAACAGTGAAGCCCACTGACATTGTGGTGAGTTCCAGGAAGGAGCTCCACTCCACTCACATATGAAATCTGGTAGCAGCCTTCCCTCCTTTTCAAGTAGTGTCTTCCAGCATCCTGTGGACAATGCTCACAGTCCTTAGTCTGGTATATCATGCACTCTGCTGTGCCTCTTTTCTACCTGTCCAGCCTGCATAGGGGCTTCAGTAAGTCACAGGCCATTTTATTTCACTGTCCTTATTTGTGCCTCTGGACCATCACACCTGCTGTTCCCTAGAAGAATAATCAAGAATGTATTTCCCTAATTTCTCTATACAGTAAACCCTTAGCTATGCTTGAAGAGTCTACTCAACATAGCCTCCAAGAGTTTCTCCACACTTCTGGGAAAATACTAGCATTTCCTTTCTTTAAAGATGACCTAATGAACCTCCATTAGTTTGTTTATAACATGTTATTTATATATCTTCCCCAGAGACTGTAGTCCTTTCAAGGACAGTGACTGTTAAGAATCATTTTTCATTTTCTAGCCCCCCTCCCCTGAAACAGTTTAAGCACATGTAGGATAGAAACTATTTTGATACAGTTTGCAAACTGTGGGTGAAAATTCATTAATAGGAAATAGAGTCAATTTAGTAAATCAAGACCAACTTTTTTCCCTAAATTAAAAAAAATAGTAAAATCAGAGTGCTTTCTGTGTACTGAGGATAATGCTTTTTCATGAAACTTTCCTTAAGTATATGAATAAATGTTTTATACGTGTGTGTATATTTTTTTATGTGTCCTGAGTCATGCACTTGTAAAATGCACTTATTTGTGAATTATGGGCTTCCCTGATGGCTCAGTGGTAAAGAATCCTCCTGCAAATGCAGGAGACGCAAATTCTATCCCTGGGTCGGGAAGATCCCCTGAGGGAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGAGCAATTCTATGGATCAAAGAGCCTGGTGGGCTACAGTCCATGGAGTCACAAGAGTCAGACAGGATTTAGCAACTAAACAACTGTGAATTACAGGGTTTTCTTTAAGTTTAAAAGCCACCTAGTTAGGATATATTTATAGCTTCCCTATAAAAGGCTCCAAAATAATAATGTCTTCAGTTCAGTTCAGTTCAGTCACTCAGTTGTGTCCAAATCTTTGCGACCCCATGAATCACAGCACGCCAGCCTCCCTGTCCATCACCAACTCCCGGAGTTCACTCCCTGACTCACGTCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCTCCAATCCCTCCCAGCATCAGAGTCCTTTCCAATGAGTCAACTTTACGCATGAGCTGGCCAAAGTATTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCGACACTCAGCCTTCTTCACAGTCCAACTCTCACATCCATACATGACCACAGGAAAAACCGTAGCCTTGACTAGACGAACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTTCCTTCCAAGGTGTAAGCGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCAGAAAAATAAAGTCTGACACTGTTTCCACTGTTTCCCCATCTATTTCCCATGAAGTGATGGGACCAGATGCCATAATCTTTGTTTTCTGAATGTTGAGCTTTAAGCCAGCTTTTTCACTCTCCTCTTTCACTTTCATCAAGAGGCTTTTGAGTTCCTCTTCACCTTCTGCCATAAGGATGGTGTCATCTGCATATTTGAAGTTATTGATATTTCTCCTGGCAATCTTGATTCCAGCCTGTGTTTCTTCCAGTCCAGCATTTCTCATGATGTACTCTGCGTATAAGTTAAATAAGCAGGGTGACAATATACAGCCTTGACGTACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGCATACAGATTTCTCAAGAAGCAGATCAGGTGGTCTGGTATTCCCATCTCTTTCAGAATTTCCCACAGTTTATTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAACAGAAGTAGATGTTTTTCTGGAACTCTCTTGGTTTTTCCATGATCCAGTGGATGTTGGCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAAAAACCAGCTTGAACATCAGGAAGTTCACGGTTCACATATTGCTGAAGCCTGGCTTGGAGAATTTTGAGCATTACTTTACTAGTGTGTCAGATGAGTGCAATTGCGTGGTAGTTTGAGTATTCTTTGGCATTGCCTTTCTTTGGGATTGGAATGAAAACTCACCTTTTCCAGTCCTATGGCCACTACTGAGTTTTCCAAATTTGCTGGCATATTGAGTGCAGCACTTTCCAAGCATCATCTTTCAGGATTTGAAAGAGCTCCACTGGAATTCCATCACCTCCACTAGCTTTGTTCGTAATGATGCTTTCTAAGGCCCACTTGACTTCACATTCCAGGATGTCTGGCTCTAGGTCAGTGATCACACCATCATGATTATCTGGGTCATGCAGATCTTTTTTGTACAGTTCTTCTGTGTATTCTTGCCATCTCTTCTTAATATCTTCTGCTTCTGTTAGGTCCATACCATTTCCGTCCATTATCGAGCCCATCTTTGCATGAAATGTTCCCTTGGTATCTCTAATTTTCTTGAAGAGATCTCTAGTCTTTCCCATTCTGTTGTTTTCCTCTATTTCTTTGCATTGATCGCTGAAGAAGGCTTTCTTATCTCTTCTTGCTATTCTTTGGAACTCTGCATTCAGATGCTTATATCTTTCCTTTTCTCCTTTGCTTTTCGCTTCTCTTCTTTTCACAGCTATTTGTAAGGCCTCCCCAGACAGCCATTTTGCTTTTTTGCATTTCTTTTCCACGGGGATGTTCTTGATCCCTCTCTCCTGTACAATGTCACAAACCTCATTCCATAGTTCATCAGGCACTCTATCTATCAGATCTAGGCCCTTAAATCTATTTCTCACTTCCACTGTATAATCATAAGGGATTTGATTTAGGTTATACCTGAATGGTCTAGTGGTTTCCCCCACTTTCTTCAATTTAAGTCTGAATTTGGCAATAAGGAGTTCATGATCTGAGCCACAGTCAGCTCCTGGTCTTGTTTTTGCTGACTGTGTAGAGCTTCTCCATCTTTGGCTGCAAAGAATATAATCAATCTGATTTCAGTGTTGACCATCTGGTGATGTCCCTGTATAGAGTCTTCTCTTGTGTTGTTGGAAGAGGGTGTTTGTTATGACCAGTGCAATTTTCTTGGCAAAACTCTATTAGTCTTTGCCCTGCTTCATTCTGTATTCCAAGGCCAAATTTGCCTGTTACTCCAGGTGTTTCTTGACTTCCTACTTTTGCATTCCAGTCCCCTTTAATGAAAAGGACGTCTTTTTTTGGTGTTAGTTCTAAAAGGTCTTGTAGGTCTTCATAGAACCGTTCAACTTCGGCTTTTTCAGCATTGCCAGTTGGGGCATAGACTTGGATTACTGTGGTATTGAATGGTTTGCCTTGGAAACGATCAGAGATCATTCTGTGGTTTTTGAGATTGCATCCAAGTACTGCATTTCAAACTCTTTTTGTTGACCATGATGGCTACTACATTTCTTCTGAGGGATTCCTGTCCACAGTAGTAGATATAATGGTCATCTGAGTTAAATTCACCCATTCCAGTCTATTTCAGTTTGCTGATTCCTAGAATGTCAACATTCACTCTTGCCATCTCTTGTTTGACCACTTCCAGTTTGCCTTGATTTATGGACCTGACATTCCAGGTTCCTATGGAATATTGCTCTTTATAGCATCAGACCTTGCTTCTATCACCGGTCACCTAAGATGGAATAAAAGTGGATACAACCCAAGTGTCTATCAATGGATGGGTGGATAAGCAAAATGTGGAATGCAATGAAATATTCGTCCTTAAAAATGAAGCATTTTGACACATGCTACATGGTGAACCTTAAGGACATTATGCTAAACTCAGTAATCCAATCAAAATGAACAAACTACATGATTCTGTTCATCTGAGGTATCTGGAACAGTTGAACTCATAGAAAATGAAAGTAAAATGGTGGTTGTTAGACACCATGGTTAGAGCCTGGAGTTAGTGCAAATGGGAGTTCTGGTTCAGTGAGAATAGTTTTGGTTTTGCAAGACAAAAATTTCTGGAGATTGGTTGTACAACGATGTGAATATACTTAACATTATTAAACCACACACTTTAAAGTGGCTAAGATAAGTAAGTTATATATTATGTGTATTTTACCACAATTTAAAACGTTTCTAAATGTTCAGTAAAAAAAGAAAGTTTATTTTTCTCTCAATTCAGAGACTCTAAGCTAGACTCTGCAGAACCCTTTGGGTCTAAACTGCTTCCTGTGTGTTGCTCTTTTTTATCTAGAATGGCACCCTTGCTGGGACTCACAGATGGCTCACCTCTATGGCTGCCTTTCCACCAGCAGGAAGGGGAGGATCAGGAACCACATGCCTTTCCTTTTAGGGCATGTTTTAAGTATTAAACATTCCCTCTACTTACACTCTCTTGGCCAGAACTTAGTCACAAGGCGATCTGGGAAATGTAGTCTTTAGCTGAGGGACCAGGTATCCAGATCAAATATTTATTATTGTTTAAAAAGAGGAAAACAAATATTGGGGCATAGTTAACAGGGTTTTGTTGTTGGATACTTCCCTAAATCAGTTCATGCAAATCTAAAAATTGCTAAAGATGAAACTTGATTCATCCTCACTAATAAGAAGAGGAACCAGAGGCTCAAAGAGCTCCAGGAACTCGCAGCAGGACTAGTATTGAGCAAGAATTTGCCACCAGGTTTGTCTCACACCAGGGCTCACTTCCCACTCACATACCTCCCTGAGGAGGTTGTGCAGAGACCCTACTATAGCTTTAGTCATTTTGTTATTGTTTTTCAATCGCTGAGCTGTGTCCAAGTCTTTGCAACCCATAGATTGTAGCACACCAGGCTTCCCTGTCCCTCCCTATTACTGGAATTTGCTCAAACTCACTTCCATTGAGTCAGTGATGCCATCTAACCATCTCATCCTCTGTCGCTCACTTCTCTTCCTGTCCTCAATCTTTCCCAGCATCAGGGTCTTTTCTGTGAGTCAGCTCTTTGCATCAGGTGGCCAAAAGATTTGAGCTTAAGCATCAGTCTTTCCAATGAATATTCAGGTTTGATTTCATCCAGCCCAGCATTTCGCATAATGTACTCTGAATATAAGTTAAATAAGGAGGGTGATGCTATATAGCCTTGATGTACTCCTTTAGCATTTTTGATCCTGGTTATTCCATTCCTTAGCTTAACTGGCCTCTAGGAAAGTTATAGAAAAATAGAATGATGAAATCTTCTGTACTTTTCCAG
Seq C2 exon
AGAAAGTCCAAGCTGAAATCGATAAGGTGCTTGGTGAGTCACAACAACCAAGCACGGCCGCTCGCGAGTCCATGCCCTACACCAACGCTGTCATCCACGAGGTGCAGAGAATGGGGAACATCCTCCCTCTGAACGTGCCCCGGGAGGTGACAGTGGACACCGTCCTGGCTGGATACCACCTGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038085:ENSBTAT00000056737:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.294
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.3=100)
A:
NA
C2:
PF0006717=p450=FE(17.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]