DreINT0054229 @ danRer10
Intron Retention
Gene
ENSDARG00000042956 | cyp2ad6
Description
cytochrome P450, family 2, subfamily AD, polypeptide 6 [Source:ZFIN;Acc:ZDB-GENE-041001-157]
Coordinates
chr20:25628830-25629291:-
Coord C1 exon
chr20:25629150-25629291
Coord A exon
chr20:25629015-25629149
Coord C2 exon
chr20:25628830-25629014
Length
135 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGA
5' ss Score
3.87
3' ss Seq
CAAAATATTTCTTTAAACAGAAA
3' ss Score
6.13
Exon sequences
Seq C1 exon
AAGAAGAATGATACAGAGGCAGGGTTTACTGTTGGCAGTTTGGTGTGGTCCATGGTGGATTTGTTTGAGGGGGGAACTGAAACAACAACCAACACACTCCGATGGGCTCTGCTTTTCCTCATCAAGTACCCTGACATTCAAA
Seq A exon
GTATGACATTTAAAGTATAAGATATGGACTCTAAAATTCAAATAATCAAATTATATTCTTAACCCAAACTGAAAACTGTCTAAACAGATTTACGGATGCAGTTTACATATCACAACAAAATATTTCTTTAAACAG
Seq C2 exon
AAAAGGTGCAAGCAGAGATTGACGAGGTGATTGGTTCCCGTCTTCCTTCTATGTCTGATAAAGCAAACATGCACTACCTGAATGCTTTCATTCATGAGGTCCTCAGGAGAGCAAACCTTGTGCCTCTTAATATGGCTAGAGTTGCAAAAAAGGACACAACTCTGGGGGGCTACTTCATAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042956:ENSDART00000063064:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.4=100)
A:
NA
C2:
PF0006717=p450=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCAGGGTTTACTGTTGGC
R:
GCACAAGGTTTGCTCTCCTGA
Band lengths:
250-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]