DreINT0054281 @ danRer10
Intron Retention
Gene
ENSDARG00000042982 | cyp2p8
Description
cytochrome P450, family 2, subfamily P, polypeptide 8 [Source:ZFIN;Acc:ZDB-GENE-061030-1]
Coordinates
chr20:25679550-25679968:+
Coord C1 exon
chr20:25679550-25679691
Coord A exon
chr20:25679692-25679780
Coord C2 exon
chr20:25679781-25679968
Length
89 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TTTCTCTACTTCATCCTCAGCTA
3' ss Score
7.51
Exon sequences
Seq C1 exon
CTCAAAGACGACACAGCTGCAGGGTTTGATGTGGAGAACTTGTGCATCTGTTCTCTGGATCTGTTTGTAGCAGGAACTGAGACCACCTCCACCACTCTGTACTGGGGTCTTCTCTACATGATAAAATATCCTGAGATACAAG
Seq A exon
GTGAGAGCTTAATACCAGATACAGCATTCATATGCAAATACAAATAATGTGTTTACATTTTTTCATGGCTTTCTCTACTTCATCCTCAG
Seq C2 exon
CTAAAGTTCAGGAGGAGATTGATGCCGTTGTTGGAGGCTCAAGGCAGCCATCTGTATCAGACAGAGACAACATGCCCTACACCAATGCTGTCATTCATGAGATACAAAGGATGGGAAATATAGCCCCAATAAATCTGGCCAGGAGTACTTCAGAAGACACCCAGATAGGAAATTACTCTATTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042982:ENSDART00000063108:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.206
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGACGACACAGCTGCAG
R:
ACGGCATCAATCTCCTCCTGA
Band lengths:
169-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]