BtaINT0046165 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003871 | CYP2B6
Description
cytochrome P450, family 2, subfamily B, polypeptide 6 [Source:HGNC Symbol;Acc:HGNC:2615]
Coordinates
chr18:50569755-50571625:-
Coord C1 exon
chr18:50571484-50571625
Coord A exon
chr18:50569943-50571483
Coord C2 exon
chr18:50569755-50569942
Length
1541 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GGCCCCATTCTTCTGTGCAGAGA
3' ss Score
5.92
Exon sequences
Seq C1 exon
GATAAGTCCAACCCCCAAAGCCAGTTCGATCATCAGAACCTCATCATGTCTGTTCTGTCTCTCTTCTTTGCTGGCACGGAGACAACCAGCACCACGCTCCGCTATGGGTTCCTGCTCATGCTCAAATACCCCCACATCACAG
Seq A exon
GTGGGTGAGCTGGGGGCAGACACTGGGGAGGGGGTTCTGACCCCTTTGCAGGTACAGAAATGGGGCTAGAGGTCTTTGGTGAATGAGAGAGGCAGCATCCCCCTCTTATACCAGGAGCCCTGAGGGTTGTTTTGGTTTTTGTTTTTCACTTGGCCCCTGACCAGGGATGGAATTTGCACCTCATGCTGTGGCAGTGTGCAGTCTTAACCACTGGACCACCAGGGAAGTCCCCCGAGCAGTGCAGGTCTTGAATGATCTACCCAACTAAGCCAGCCCTGTTGGTAGAAGGATTAATGAAGAATCTGTCAATTTGGGGAGTTCCCTGGAGGTCCAGTGGTTAGGACTCAGTGCTTTCACTACCATGGCCCTGGGTTCAATCCCCGGTCAGGAAACTAAGATTTGGCAAGTAGTGCAGCATCACCAAAAAAAAAAAAAAAAAAAAATCTGTCAATCTGTTTTCTCACTGTTTTTCCTATCATTTAAAGATTGACCCATCATTTATCCATCTGTCCTTTCAACTCATCAATCAACCTGTGCACTCAGATTCTTTCATCTATGACTCATCTAGGATATATATATCCATGCTTTATTTGGACAAGCTGATTCATCTGTTGATCATTTGAAATAGCAATTCATTGAATGAACTGTTTGTCACTGATTCATCTGTTCCTTCATTCATTCATCCATCCATCTGTTTTTCTAAAACTAGGTTACCTACCTTAATCCTTCCATCGCTTGTTTTTCACTTCATCCTTCATCCATCTATCTTTTCATTTATTTATTTAATAATTCACTCATTTATTCACCTTGATTTATACATCTATCATTCAGTCCATCCAACCACCCACTTATTCCTCTGTTTACCTGTTCCTTTAAATGTATTCATTCACAATGTTCTTCCATAAATTTAGCCATCCAACCACTCATATGAGTTATTGGTTCATCAAGTTCATTTATTTATTTGTCTATGGATCATTTAGTAATAAATTAATCTTTGATAAGTTAATAATACATCCATTCATTAGCATTCTTCCATTTACCAGTCTTTCCATTCATGAATTGATCTACTGCTTGATGTATTTATTTATTTATCCAGTTGTTCATGGGTTAATCCACTGATGTGTTTTACAATTATATTCCTGAGGACCTAGCACAGTGCCTCATCTATAATATACACACAATAAATATTAGTTCATTTTCTACTCATCTTAGAGGAGGAACTTTGATAGGTTCATAGCTTTGGGTTTTTAGTCTGAAATTCTGAGCAAAACTGGGGTTCACGTGTGTGTGTTTGCTTGTGTATGTTGGGAGAAAATCCATAATATTCATTAGATATTAAAGAGTGAAAATTCTTGTAGTTTTCCCATTGCTCCTCCCACCCCAGGCTGGTTACTCAGAGGGGTGTCAATGACCTAACCATTTCCTATATGTTTTCTGGGCTCATTGGCCTGGAAATGAACAGACCAATGTTCATAGAACATTGAACTGTGTTCCAACATAGGAATATAAATGAGGTTCACTGGCCCCATTCTTCTGTGCAG
Seq C2 exon
AGAGAATCCAAAAGGAGATTGACCAGGTGATTGGCTCATATCGCCCTCCAGCCCTGGATGACAGAGCCCAAATGCCATACACGGACGCAGTCATCCATGAGATTCAGAGATTTGCGGACCTCATCCCCATTGGTGTGCCCCACATGGTCACTAAAGATACTCATTTCCGAGGGTACATCCTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003871:ENSBTAT00000043951:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.2=100)
A:
NA
C2:
PF0006717=p450=FE(16.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAGTCCAACCCCCAAAGCC
R:
GGGAAGGATGTACCCTCGGAA
Band lengths:
326-1867
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development