MmuINT1008049 @ mm10
Intron Retention
Gene
ENSMUSG00000066704 | Cyp2b19
Description
cytochrome P450, family 2, subfamily b, polypeptide 19 [Source:MGI Symbol;Acc:MGI:107303]
Coordinates
chr7:26764250-26766928:+
Coord C1 exon
chr7:26764250-26764391
Coord A exon
chr7:26764392-26766740
Coord C2 exon
chr7:26766741-26766928
Length
2349 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAC
5' ss Score
4.29
3' ss Seq
TATCTCTTCTTTTTGTGCAGAGA
3' ss Score
8.64
Exon sequences
Seq C1 exon
GAGAAGTCCAACCACCATACAGAGTTCCATCACCAGAACCTCGTGATCTCTGTGCTCTCTCTGTTCTTTGCTGGCACCGAGACCACCAGCACCACGCTCCGTTACAGCTTCCTGATCATGCTCAAGTACCCCCATGTCGCAG
Seq A exon
GTGCACCATGAGTGGACAGTTGGGGGATCTTCAACTCTCTTTTGGCTGCAGGGGTTTGTGGGGGTGAGAGACATGGGCCTCTTACATCTGGAGCTCTGAAGGCTTTGTTTGGTTTGCTCGAAACTAAAGCAGTGCTGTGGTGGTATGTGAATGAGCAATCAGCTGACTTGTTTTCTGTTGTTTCCTCCTATCACTTAAAGATTGATCTGACTATCAATTCAACCTTCCTCCCCTCCTTCTGTCTTTCTGTATTTACATCCATCTATCTGGCCATCCATCCACCCAATCTTCCTTTTCTCCTTCTGTCTTTTTTTATTTGCATCTATCCATCTATCCATCCATCCATCAATCCAACCCTCCTTCCCTCCTTCTGTCTTTTTGTATTTGCATCCATCCATCAATCAAACCTTCCTTCTCTCCTCTGTCTTTCTGTCTATATATATATACATACATACATACATACATACATACATACATACATACATACATAATCAATTCAACCTTCCTTCCCTCCTTCTGTCTTTCTGTCTCTACATACATTTATACATACATACATACATACATACATACATACATACATACATACATCAATTCAACCTTCCTTCCCTCTTTCTGTCTTTCTGTCTTTACATCCATCCATCCATCCATCTATCTATCCACCCATCCATCCTGTCCTGCCTCCTTTCCTTCTGTCTTACATCCCTCCATGCGCTCATCTTTCTATTCATCCACTTTTCATCCATTCACCCATTCTATTCACTAACCTGGACATCTATTGTCCATACATACATACATTTTTCCACCCATCCATCTATAAGTCTATTCACCCACTCATATCGTCACCTGCCTATGTTTATATCCATAGATTATTAATCTTTGAAGCACCTGCCCATCTTCTTCATATCCATAGACTATTAATCCTTGATTTGTTCATCTCAGATTCACACAAGGATATGCCTTTCATTCATTCATTTGGATTAATCAACTCATGAGTTTTATTCTTTGATCAGGAATATTTGGCTGGCCTATTGTTACTGATTCATTGGTCCATTGAAATATGAATCTTTTCATTCCTTAATCCTTCCAACTGGCCTTTGAATTCACCCTTCATGTGTCCACCCATTCCTACATGTATCCACTTAATACATCTAATAACTTACTCATTTCTCTGTGAGTTTATTTATCATCCAATACAGCTTTAATTCCTATATTAATCTTCATTAAATTTAACATTCGATTGATCATTGATTTGTTGTGTTCACTATTTTTGTATTTATGAACCAATTATTAATTTTAATTGATTAATATCACAAGTAATAGGTGGAAAATGCACATCTTATTTCCATCACTCATCAATCTTTCCTTTTATTAACTGGCTCATCCATTTCTTGGTTGGCCTACATCCACACATTTTAAACTTTTAAAAATGATTTGGAGTTATTGTGAGCCTACCTCCCACAGCTCTATGTAGACATGAAAGGAGAACTTTGTGTATTGTGTTCTCTCCTTCCACCTGCACATGGGCTCTGGGTGTCAAAGTCAGACTGTCAGGCTTTCAAGTCAAGTGCACTTATTAGCTGAACCATTTCCTCAACCAAAATATTCATATTTTATATGTAGTTACACATACAGTAATTAACTTCCCTTTTATTTCTTAGGATATAACATCAGATTATTAGCCTACGTGTTAAAATTTATTTTAATTTTATGTGCATTTGGTGTTTGGGCTGCATATATGTCTGTGTGAGGGTATCAGATCACATGGACCTGGAATTACAAAGAGTGTGAGCTGAATTGGGTGCTGGGAATTGAACCTGGGTCCCCTCAGTGAGCAACCAGTGCTCTTAAAAACATTGAGTCATCCTTCCAGCCCCTGGATTTTTAACTATGAATTCCCTGCAAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTCTGTGTGTGTGTGTGTGTGTCTGTGTAAACTTGTGCACGTAGGAATACAATTGATAACATTCATACATTCTTGCCATTTCCCCCTCCAGCCCTTACTGCAAACTAACAGTAGAAATGGCTCCTTATTGAGGGTTTTCCTTTTCTCTCTTTCACAAGCAAAGCTGGAGCCTGCTGAGAAGAGACTGTAACAGGCTCTAAGCATGATTGGAGAGACAGATCCTTGAGAGAGGCACAGGTGTGTGCTCCCAAAAGGGCACTGTGTCTTCCTCAGCAGAGTCTCCTTGCTCTGAACTGTTCCTGGGTTGTTGGATCCCAGAAAACTGGGTCACTGTGCATCACCTCCAAGAAGGGGATACTGTCTATTATCTCTTCTTTTTGTGCAG
Seq C2 exon
AGAAAGTCCAAAAGGAGATTGATCAGGTGATCGGCTCACACCGGCTACCGACTCTTGATGATAGAACCAAAATGCCATACACTGATGCAGTCATCCATGAGATTCAGAGATTTACAGATCTTGCTCCGATTGGTCTACCACACAAAGTCACCAAAGACACACTGTTCCGAGGATACCTGATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066704:ENSMUST00000077855:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types