GgaINT0082267 @ galGal3
Intron Retention
Gene
ENSGALG00000016690 | F1NFF7_CHICK
Description
NA
Coordinates
chr3:111593060-111593515:+
Coord C1 exon
chr3:111593060-111593201
Coord A exon
chr3:111593202-111593330
Coord C2 exon
chr3:111593331-111593515
Length
129 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TCCAAATGCTCTTTTCACAGAAA
3' ss Score
7.36
Exon sequences
Seq C1 exon
CAGAATGAAAAGGCCAATAAATTTTTCGACGATGAAAACTTAACTGAGGTTGTGAGAAATCTGTTTACAGCTGGCATGGATACCACAGCCACCACTTTACGCTGGGGCCTTCTACTTATGATGAAATACCCTGAAATTCAGA
Seq A exon
GTAAGTGGAAACTAGGCATTCAGTGGCTTTCTTCTCATCGGGACAGCAAGTTCTCCTTATCCTGTTATTCCTAGCAGGGGAAAGAGAAGTTTGAACAATGTATGTATGATCCAAATGCTCTTTTCACAG
Seq C2 exon
AAAAAGTCCAGGAAGAAATAGATCGAGTGATCGGCTCAAACCCCCCAAGAACTGAGCATCGAACTAAAATGCCATACACGGATGCTGTTATACATGAAATTCAGAGGTTCGCTAATATCCTGCCACTGAACTTGCCTCATGAGACGACCATGGATGTCACTATCAAAGGCTATTTCATTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016690:ENSGALT00000026937:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.290
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTTTACAGCTGGCATGGA
R:
AGTGACATCCATGGTCGTCTCA
Band lengths:
244-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]