GgaINT0083454 @ galGal3
Intron Retention
Gene
ENSGALG00000022812 | E1BY32_CHICK
Description
NA
Coordinates
chr3:111600739-111601920:+
Coord C1 exon
chr3:111600739-111600880
Coord A exon
chr3:111600881-111601735
Coord C2 exon
chr3:111601736-111601920
Length
855 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
GCACTGGTTTCTCTCCTCAGGAA
3' ss Score
10.27
Exon sequences
Seq C1 exon
GAGAAATCCACTACCAATGGGTATTTCCATAATGGTAACCTGCTAAGCTTGGTGAGCAACTTGTTCACTGCTGGTGTTGAGACCATTTCCACCACACTAAACTGGAGCTTTCTGCTGATGCTAAAGTACCCTGAAATTCAGA
Seq A exon
GTAAGTGGCTTTACAACAGATGCTCTTGAACTCAGCACAGTAGAAACTGAACAGGACCTTTGATGGTTAACAAATCTGCTAAAAAAAAGACAAGATTTTCAGTTAATTATTATCTAGGTATGACTACACCCTGTGGTTCAGACCCAGTGAGGGACACATTAGCCAGTCTACACCGTAGATTACTGACGATTTTCATATGGGCCAGGTTCTTTTCTCAGTAAAATCTCAATAATTAGAAGACAAACAAACAGACAAACAAACAAAAACAGAGCTAACCAGAGCTATCCTGTGTCGGGCAATGAAGTTGTTCCAGGTTTCCTTCAGTAACACCCCGTGGATAACCAATGGAAGAGACTTGCACTTTAAATGCCTGAGAGCATTCAAGGAACTGCTCTTCACCCAACATCTACAGAGAGGGACACTTTACTACCTCTGGCAAACTGATCTGAACCTGCTGCCTTCCACCTTCCAGAAAACAACACAGAACCCAGCAGAGAATATGAAATTAAAAAAAAAAAAGTAATGTTACTTAGTTCCATCGTTAATATTTTAATGCAAGTATATATAAGAAAACAACTTATACACACTTTTACGCATATATTTAGTTGACAAGGAAAAATACTAACTACTGAAAAGTTTAAATATTAACTACTGAAGAGCCTTCTTAAATTACCCATAGGTTTTTTATTGGCAAGGAAATGATCAGACACTGTAGTTCTGTTCACCTCCCATTATTATTTGGGAGAGTGCATGGTTTTCACTCGAGATCTTCCATAGTTTTGCATCAGTGCAGCCCACTATGTCTGAGGGTCGAAGGAATGATTGTCTCTTTCTTGCACTGGTTTCTCTCCTCAG
Seq C2 exon
GAAAGGTCCAAGAAGAGATAGAGCAAGTGATCGGGTCAAACCCCCCACGCATTGAGCATCGAACTCAAATGCCATATACAGATGCTGTTATCCATGAAGTTCAGCGGTTTGCTAATATCCTGCCATTGGATTTGCCTCATGAGACTGCTGAAGATGTCACTCTCAAAGACTATTTCATTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022812:ENSGALT00000026936:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.161
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTATTTCCATAATGGTAACCTGC
R:
CTTGGGAATGAAATAGTCTTTGAGA
Band lengths:
310-1165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]