RnoINT0044534 @ rn6
Intron Retention
Gene
ENSRNOG00000055078 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:RGD Symbol;Acc:2480]
Coordinates
chr5:134509665-134509908:-
Coord C1 exon
chr5:134509844-134509908
Coord A exon
chr5:134509748-134509843
Coord C2 exon
chr5:134509665-134509747
Length
96 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
AGCCCTATCTGTCTCCTCAGGTC
3' ss Score
10.33
Exon sequences
Seq C1 exon
GCAGCCTGATCTCTCTGCACATCTACGCCCTCCACAGGAACAGTACTGTGTGGCCTGATCCAGAG
Seq A exon
GTACTGCATCTTGGAGGTCAGACAGTGAGTAGGCTGTGGGGTTACCCTCTGCCAGGATTTGCTGAGTACTTAAGAAAGCCCTATCTGTCTCCTCAG
Seq C2 exon
GTCTTTGACCCACTGCGCTTTTCTCCTGAGAATGCTGCAGGACGGCATCCCTTTGCCTTCATGCCTTTTTCTGCAGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055078:ENSRNOT00000013321:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.6=100)
A:
NA
C2:
PF0006717=p450=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTGATCTCTCTGCACAT
R:
GCCCTGCAGAAAAAGGCATGA
Band lengths:
143-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]