RnoINT0044587 @ rn6
Intron Retention
Gene
ENSRNOG00000029478 | Cyp4f39
Description
cytochrome P450, family 4, subfamily f, polypeptide 39 [Source:RGD Symbol;Acc:1308796]
Coordinates
chr7:14505435-14505742:+
Coord C1 exon
chr7:14505435-14505501
Coord A exon
chr7:14505502-14505612
Coord C2 exon
chr7:14505613-14505742
Length
111 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CAACATATGTCTGCCCACAGGTC
3' ss Score
9.96
Exon sequences
Seq C1 exon
GATGAAGAGGGGAAAGAATTATCTGACGAAGACATCCGGGCTGAGGCGGATACGTTCATGTTTGAGG
Seq A exon
GTAAGGATGCTGAGGGAGTCTGAGGGTCGGTGGGAAGAAGTACCACCATCTTCCTGCTGTGGGGAACACCCTGGGGGACACTCTAATCTTCCAACATATGTCTGCCCACAG
Seq C2 exon
GTCATGACACAACATCTAGTGGGCTGTCGTGGGCGCTGTTCAACCTGGCGAAGTATCCGGAGTACCAGGACAAGTGCCGGGAAGAGATCCAAGAAGTCATGAAAGGCCGAGAGCTGGAAGAGCTGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029478:ENSRNOT00000007548:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.7=100)
A:
NA
C2:
PF0006717=p450=FE(9.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAGGGGAAAGAATTATCTGACG
R:
TCTTCCAGCTCTCGGCCTTTC
Band lengths:
186-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]