HsaINT0044500 @ hg19
Intron Retention
Gene
ENSG00000171954 | CYP4F22
Description
cytochrome P450, family 4, subfamily F, polypeptide 22 [Source:HGNC Symbol;Acc:26820]
Coordinates
chr19:15654782-15655090:+
Coord C1 exon
chr19:15654782-15654848
Coord A exon
chr19:15654849-15654960
Coord C2 exon
chr19:15654961-15655090
Length
112 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
ATACCCTCATCTCCCTGCAGGTC
3' ss Score
11.79
Exon sequences
Seq C1 exon
GATGAAGATGGAAAGGAACTGTCAGACGAGGATATCCGAGCCGAAGCAGACACCTTCATGTTTGAGG
Seq A exon
GTGAGGATGTGGGGTGAGGCTGGAGGAGGGCAGGAAGGGACATCATTGTCTGTAGACAGCATCTCTGCTTTCTTCAGGCAGCCTCCATTCAGATACCCTCATCTCCCTGCAG
Seq C2 exon
GTCACGACACAACATCCAGTGGGATCTCTTGGATGCTGTTCAATTTGGCAAAGTATCCGGAATACCAGGAGAAATGCCGAGAAGAGATTCAGGAAGTCATGAAAGGCCGGGAGCTGGAGGAGCTGGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171954-CYP4F22:NM_173483:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.7=100)
A:
NA
C2:
PF0006717=p450=FE(9.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAAGATGGAAAGGAACTGTCAGA
R:
CTCCAGCTCCCGGCCTTTC
Band lengths:
186-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)