RnoINT0044599 @ rn6
Intron Retention
Gene
ENSRNOG00000032895 | Cyp4f4
Description
cytochrome P450, family 4, subfamily f, polypeptide 4 [Source:RGD Symbol;Acc:708363]
Coordinates
chr7:14901581-14903808:+
Coord C1 exon
chr7:14901581-14901851
Coord A exon
chr7:14901852-14903741
Coord C2 exon
chr7:14903742-14903808
Length
1890 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
GTGTCTCGCTTTGTCTCCAGGAT
3' ss Score
10.54
Exon sequences
Seq C1 exon
GAAGCCCAGTGAGTATATTTCTGCCATCTTGGAGCTCAGTGCCCTAGTGGCCAAACGGTACCAGCAGCTGCTTCTACACACAGACTCACTCTATCAGCTCACCCATAATGGTCGGCGCTTCCATAAGGCCTGCAAATTGGTACACAACTTCACAGACGCTGTCATCCAGGGTCGACGACGCGCTCTCCCCAGTCAGCATGAGGATGATATCCTCAAGGCCAAGGCCAGGTCCAAAACTCTGGATTTCATTGATGTGCTGCTGCTGACCAAG
Seq A exon
GTGGGTTCTCAAGGGGTAGAATGGGGCTGCTTAAACTTAATTTGTTGAGTGTGATGATGGACACCTTTAACCCCAGTATCCCACAGGCAGCAGTAGGAAGATCATCATGAGTTTGAGGCTGGCTTGGTCTACATATTAAGCTCCAGGCTAGTCAAGGCTACCCAGTGAAACCACATCTCAAAATAAAAGATTAATCAATTCATTAAAATATCTCTTTTTGTGTTTGCAAGGGAAAATTTTTTTAGGATAGAATCTTACTAAACAACCCTGGCTTGCCTCAATCTCATGGGATTTTTGCCCTCACCTTGAACACTCTGGAATTACAAATGTATGCCATGTATAGTTATCATTTTTTAAGACTAGTCTCACTGTGTTGTCAGTGAATGGATCCTGCGGTCCCAACTTCCCAAGCCGAGGACTACATGTTTGTGCCACAAACTCAGCTTTAAGGGTAGAATTAATAACAATATCAAATATGGGATCAAAAGACAGTTCTGGTTTGGGACTTGATGTAGAGGATACCTAAGGGCTATGGAAGTCATTTGAGGAGAGGAGGGACAAGACAGAAAGAAAAATTATAGAGATAACAGCAGAGTCCACTCAACATACCCCTGCTAGAGCTGAAGCCGAAAGACCTCAGAGTTTACTCTATTTATAACTTAATATGTTGTTGAGAAAACATGTCTGTATCTGTATGTGTGCCTAGAACTATGTACCTGCAAGATCAGGGCCGCCCATCCATTGTCTCCAACAATAATAGCAGCCAGACTAGGATTGCAAGAATGACTCCCGATTCCCAGCTCCTCCTTTCTCGGGTGATGTAGCGATTTTATCTGTGTGTTTAGCAGGTCTTACACCACAGGAAAAAGACCAATACATTATGAACCTCGCGAGATTCACAGGAGAGTTGGCACATCTGTGTCTTCTTTGTTTCGGGAAGTACGAACAGATGGGAAGGGAGCAAGAGCTAGAAAGCAGGAGATAAAAGAGGAGAAGGATATGGAAATAAAGAGAAGAGATGGGAGGAAGAGAATAAGAGATGAGAGAGCTGAAGAGGAAATTTTTAAATTAATTTTTGAGTGTGAAAACGAATGTGTTTCATTATGTCATAGTCATGCACATATACCATTTCGCATTGAGAGAACTTTATTCTGGACCGTAAGCAGGTTTTCTCCAATCACAGGTGAATTCTACAGGTATGCAAGTGTAATAGACTCCAGAGGGCATAAGACACATTTTCTGCATGTAGCACCCATGGATCGTAGAGGACACAATAGGAAATGGGATGCAGGGTAAAACAGTCATGGGAGGAAAAACATACGAAAATATTTAAAAGTGAGGAAAAAAAAGAAAAGGGGAAGTTTAGTTCTTGGTCATATGTAAGATGACATTATCTGTGCTCTCACATTGTCACGTTGTCAGTATTTCTCCTGCCAGTGCAATCCTTTCTGCCACAAATGTGCACCATTCTCTTGCTGACAAGGGAGAAGATAGACACCATTCCCACCACACTATTATGGAACAATTAACAGAAAATGTCCCACACCTCCTTCCTAAGGAGAAGATCCGTATAATGAGAGTGATCTTTGAGCTCCAATTTCAAAGGAATATGGCCATGACATCATCCTATATGCAAGGTTGCTTGCTCCTTTGTTTCGTAGAAATCATCATGCAGAAACGGGAAAATATTCAGAGGTTGCCAATTCCTTCAACAAGGAAAAGCAAACGAACAAAGAGGAGTCAGACAGTCAAGAACTATGTCTGGAGGTGGAGACCTCTGGTGGTGACCAAGGGAGATGCAGAGGCACAGTGGGCTTGGGATCTAAGAGCTGTCTCAAGTTAGACATAGACTCAGGACTGCTGCGATCTGGTGTCTCGCTTTGTCTCCAG
Seq C2 exon
GATGAAGATGGAAAGGAGCTGTCAGATGAAGACATTAGAGCTGAGGCTGACACCTTCATGTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032895:ENSRNOT00000041034:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(19.4=100)
A:
NA
C2:
PF0006717=p450=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAGTGAGTATATTTCTGCC
R:
TCAAACATGAAGGTGTCAGCCT
Band lengths:
334-2224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]