RnoINT0044620 @ rn6
Intron Retention
Gene
ENSRNOG00000043233 | Cyp4f6
Description
cytochrome P450, family 4, subfamily f, polypeptide 6 [Source:RGD Symbol;Acc:708365]
Coordinates
chr7:15209800-15219105:-
Coord C1 exon
chr7:15218961-15219105
Coord A exon
chr7:15209854-15218960
Coord C2 exon
chr7:15209800-15209853
Length
9107 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
ATTGTCCTCCTGTGTGTCAGCTG
3' ss Score
6.92
Exon sequences
Seq C1 exon
ATGAAGAACAACGAGGAAGGCATGCAGTTCATAGCACATCTGGGCCGCAACTTCCGTGATATCCACCTCTCTTGGGTGGGACCCGTGTACCCGATCCTGCGACTCGTCCACCCTAACGTCATTGCTCCCCTGCTCCAAGCCTCAG
Seq A exon
GTATCTGAAGCACTGCTCTCTTCCCCACTTCTCCTCGTCCTTCTCACACCTACACGGACCAAGCTGAGCAGGGGATGAAGCCATGTGTCATTTGTCAGAAATTTTCTGGATGTCACCAATGTCTTGGGTCTCCCATAGTGCTGAGGTCTGTTTGGCTTGTGAGAAGGAAACTCAGTCTAATCAAAGAAAGGAAATCTATCATCTGGGGGGTTAACTCAGACATGGAGCACTTGCCTGCCGTGTACAAGACCTTAGGTTGCATGCATAGCACTGGAAAAAATGTTAAGGGATCTATTGTTATTGAGGTCGGGGAGGGAGGTCTCCAGGCACAGGTGGAGAGAACCGTCACTTCTTAATTCTCATTTTTTCTTTGTGGTGGTTTCACTTTCATGCTGTAAACAATGACTCCTAGAAGCTCGCATCTTCAAAAAAGTCAATGTAGTCTTGAGAAATATTCTAGGGTCCCTTTAAATTTGGTTTGAGTTTCGTGAGAAGACCGGGTACTCCCTCTAATCACTGTGGCTTGACCACCGAGGTTTGGGTGGCCTGGCCACCTTTTCAAGTACTGGAATTGAAACTGGGAAGGTGTGAGGTATTTGACCCAAAAGGATAGGAATATACAAGCAGACTCCACAGCTGTTCATAAGTCACTGGAACCCTGAAGCTAATGCCATCTCTCAGTGCAAATGCCGGTTAGCAGACAGTCGAGGGTGGCATCTAGAAGTTGCAATTGATTCAGGTAACTTGTGAACTAAAAAGGCACTAGTTTAGCATGTGTGATTAGTTACCTTTCTATTGTGATAAAACACTATGACCCCTTACAGAAAGAAAGGTTTATCTGGGGCTTACGGTTCCAGAGGGATGAGTCTGTGACCACTACAGTGCGTGAGTACAGCAGCAGGCAGGTGTGGTGACTGGAGCTCATATCTCACAGCACTAACAGGAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTGCGAGGCGTTTAAACTTCAAAGACTACCCACCAATGACTCACTTTTTCTAGCAAGGCCACATGTCCTAACCTGCCCCAAACAGTGTCACCACACTGGGAATGCCTGAGATATGAGGGGCTTCTCATTTAAACCACCACAACCCTAAAACACTGCCTTACAGAAGGAGATGAGCATACTGGTATGCACTTGGAATCCCAATACTGGGAGGTAGAGACAGGTGGATCCTGAAGCTCGCTGGCAAGCTAGCCTTGTCAAATTGGTGAGTCCAAGTCCCAGTGAAAGACTAAACAAACAACAAACAAACAAACAAACAAACCCAAACAAACAAAGACAGTAAATGTCTCCAGAAGAATAACTCCTGAGCTTGACCTTTGACCTCCACATGCACAGCACACACACATATGCCATCCCCTGCCCCAACACATACATCTTTCAAGCAAGTAGATTATATAGGGAAGGAGAGAAATAGAAGCTGATCAACTCTGTGGAGCTTACCCAAGATATTCCCACAGATGATGAGCTCTGTTAGTGTCTGTGGTCTGTCTTGCATTCTTCTTACTGTTGCCTAGCCTGAGAGTAGTTGCCTCAGAATAAACAAACCATTAACTGTGTATTTACAGATCTATTTACAACACATACCTTTCTTCCCTCAATATGGAGTGAAATTATTTCCTTGTAATATAGAACATGAAGTCCCCCTAACATGGGGGGGACTTTTAACTGTTATTAAAAGTTGTTATATCTTGCTGGGTGATGTTGGCACACTCCTTTAATCCCAACACTCAGAAGGCAGAGGCAGGTGAACCTCTGAGTTCAAGGCCAGCTTGGTCTATAAAGTGAGTTCTGGGACATCCAGGGTTACATAGAGAAACCCTGTCTCAAAAACCAAAACCAAACAAAACAAAAGTTATATCTCATAAGACCCATTTGACGTAAGAGCTGTTCTCCTATTTCTGAGTATCCACTTGACTGTTGGCTTCTTACCAATAAGTGAATCTTCCAGCACAAACCTGTGTACGTCCAAGCACATCCTATAAAATAGTAGTAAGTTAGTGTATCAAAAAGAATAAAGAGGAGGCTTTTCCATGACCAGGACGATTCAGGACTATGAGGTAAGAAAGTCAGATCAACGATCTCTACCTTTTGTATATCAAAGATGATATTGTGAGCTATTTTAATTTTTTTATTAGATTAGATCATTTTAGCACAGCCTATACTTTTGGCTGTTGAACTCTTTATACTTTTTTGGTGCAGTAATAATGATTTTTTTCTATATTTTCAGTTTTGAATCTGAAGTAATTTGAGGTGGAATGCTGGACTTGGTGTAAAAAGTCCTGATGCTTATCTCTGAAAGAAATATAAACAACATACAGCCAGGAGTGGAGTGTAGAAGACATTTAGTCCCCACTATGTATCCTTGTGTATCAGCAAGGTCTTTTGTTTGTTTTGTTTTTGAGTTTAGAGTTCCTCTCTTATTTTTCTCCTCTTTATTGGTTTTGGAAAACTTTGTACAATATATTTTTTATCATATTCACCCTCCTTCTCTTCCAATTCCTCTCCAATCTAACCCCCTTCCCTATCCTCCTAACACTGTGTCCTCTCTCTTTAAGAAAAGAAAATGCCATCAAGTAGTTTGTGCTGTCCACATACATATACTCTTTCTTTTTCTTTTTCTTTTTTGGTTTTTTTTGAGACAGGGTTTCTCTGTGAAGCCCTGATTGTCCTGGAGCTACTCACTGTGTAAACCAGGATGGCCTCGAACTCACAAAGATACACCTCCTTCTGCCTCCCTCGTGCTGAGATTAATGGCGTTCACCTCCACCACCTGGCTTGTCCGTATACTCTGGAATGTGTGGAGACATATAATGATCAAGGCACAGAGAGTGAAGACTGTAGAGTGGCCACCCCTATGGGGCATCTACATTACACCTCCTCTTCCCAAGGCTCAGGGACCACTGCAGAACGGGGAGCAGAAGGAGCGTAAGAGGCAGAGGTAGAGGGTGACTATAAGAAAACACGGTTTTCCAGACACAAAGGGCATTTGCATTCACAACATTTGTGACAGCGTGCACGAAACTTGTGCAAGCTCAAGCCAAACACAATCCAAGCATGGATAGGGAGTGTGGGCATAACGTCTCACCCCTACCTGAGGAGCTGTGGTAACAAAGCGACTGGGAAAAAGAGGGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCTCCTCCTCCTCCTCCCTCTCCTTCTCCTCCTCCCTTTCCTCCTCCTCCTTCTCCTCCTTCTCCTTCTCCTCCTTCTCCTCCTTCTCCTCCTTCTCCTCCTCCTTCTCCTCCTCCACCTCCTTCTCCTCCTCCACCTCCTTCTCCTCCTCCACCTCCACCTCCTCCTCTTCCTCTTCCTTCTCCTCCTCCTCCTTCTTCTTCATGTTAAGTTAGATTTGTTCGTGCCATTTTATGTGTAAGTGTCCTGCCTGCTTACAAGAATGTGTACCACAGGCATGCTTCATGCCCACAGAGGCCAGAATAGGCCATCTCTAGAACTGGAGTTCTGGATGGTTGTGAACCCCATGTGGATCTTGGACCTTGGGTCCTCTGCAAGAGCTAAAAGTGCTTTCAAGTGCACAGCCATCTCTTTAGCCTCAAAACAGTTTTCTTAAAGGGGTGGCCTCTGGTGGGTCCCTCCAGCAGAAGATCCATTTCAAAAAATATTTATTTGAACTGAGTGAGGTGACACATGCCTTTAATCTCAGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATTCTGTCTCCAAAAATAATTTTTAAGGGATTTATTTGCTTATTTAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGAGTGTGTGCGAGCACGCATGCGCACGCGCACTTGTGCCTGAGTGGATAGTTGTGCACTACATGTGTGTAGATGCCTCTGGAGACCAGAAGAGGGTGTCAGATCCCCTGGAGCTGGAATAACGCGTGATTGCAAATCACTGGAATCAAACCCGTGTCCACTACAAGGACACACAATGCTCCTAACTGCTGAGCGATGTTTCCAGTCCTGAGCATCACTTAAAAAAGAATGGCCACTTGACTAATTAATTTTGGAAGAACTGGCACAAGCGACTCCATTTTTCTTGCTGAGTTTGAGAAGCCTCATACTCGTGGTCCTCCCTTTTAACCTCTCGAGTATTTGGATTACAGGCATGGACCCTCATGCCCAACACAAATTTATTTTTTTTTTGGCAGCCTTTTGTCTTTGATCAGACATTCTCGTTTGTTTTGGTTTGGTTTCCTGAAACCACTTCTGATTAGCCGTCTGGTGCTTTGGTCCCAGTTGTCCTTCATCACTGGGAAGGAACTGTCCCAGTTGGCTTGATCTGATCTCATGGTTTCTGAGGCAGTTAAGTGACAGATGTCAAGGAGTTAGTGTCAACAAAACCCCTTATGACCAGTTGTAACCAGCTAAAGGACACGCAACGGCAGTTCTGAACTTCTGGGGCTGCTATTCACCAGGGTCTTCTGAGACCATCTGCATATCAATATTTACATTATGATTCATAACAGCAACAAAATTATAGTTATAGAGCAGCAACAAAAATAGTTTTATGGTCAGGGGTCACCACAGCATTAGTAACTGTATTAAGGGGTTGTAGCATTATGAAGATCGGGAACCACTGGAATGGGTCCTAGGACTGAGCATTTCACCTGAAGTCCATTTGTAAATTCAATTTTGGTTGCTGTAGATGATGGTCTGTCCAAGCATCTTTTAAAGATCTGCTCAGTTTCATTTATTTATTTATTTATTTATTTATTTATTTATTTATTAAAAGATGTATTTATTTTATATATGTGAGTACACTGTAGCTGTCTTCAGACACACCAGAACAGGGCATCAGATCTCATTACAGATGGTTGTGGCCACCATGTGGTTCCTGGCAATTGAACTCAGGACCTCTGGAAGAGCAGCCAGTGCTCTTAACTGCTGAGCCATCTCTCTCTAGCCCCTCAGTTTCTTTTATTGGAAGCTTTACTTCTTCAAAATGTCAACTGGCAGCACGGTTTAATGAGAATTAAAAATACAACCAATAGTGTTAAATACTTAAAGAAAACTAGTTTAATAAATAAATTCTAAGTTAATAAATAAGTAATAAATTAAAATCATTTGCCAAAAGTGGTTGTAAATCTCTTTATTTACATGGTTTCTCATACGTCCTAGCTGACCCCAATTTGGCTATGTAGCATAAACAACCTTGAATTCCTGATCCTTTTGCATTCATCTCCTGAATGCTGGCATTACAAATATACACAACCATGCTAGCTTTATGTGGACTGGACCTTGGATTCCATGCATGCTAGGCAAACAGTTAATCATCTGAATTACACCCCAGCCCCTGATTACAAATTTTATAGAGAGAGGCTAGAACTGTGGGAAACAAAAGAATCAGAGTAACCCTGGTTAGAGTTTTGCAACATGCTCAGCAATCAACAAAATAAAATCAGCAGCTGGAACCATCTTAAAATAGACTTGCTTATAAAATTGAAAAGAGGGGGTTGGGGGACTGGCTCAGGGGTGAAGAGCACTCACTGCTCTTGCAGAGGACCTGAGCTCAGTTCCCAGCACCCACGTCAGGCAGCTCACAACCATCTGTACCTCCAGATCCAAGGGCTCTGGTACCTTCTTCTGGCCTCCCCGAGTACCTGCACACATGTGACATAAAAATGCACACAAGCAAAAATAGTAGCAGATAATCCTTTTTTTAAAAGTTGTAAATACATCCGTAGATAAACCTTGAGTTTGTCAGGACTCGGTTTTTTAAGTAGTTAAAGCCTGACAAAGTTAACAGAAAGCATGCCTTCATTAAACATAAAGTTTTATTTTTAAGTTGGTTTTGTAACTGTTACCACGAACAAATCAATATCTTAAGAGAACCTCATTGATTAACCAGAGAGCTAGATTTTGGTTGTACATTAGCCTACTAAATTTTGACCTCAGGAATTTTAATGACCCGCAGTCACCATAATTGCTATCTTTAAAGAAGATCCTTTTCAGTCTGGCAGTGGTGGCACTCGCCTTTACTTGGGAGACAGATCTCAGAGTTCCAAGTCAGCCTGGTCCACAAAGTGAATTTCAGGATAGCCAAGCTACACAGAGAAACCCTGTCTTGAAAAACAGAACAACAAATAAAAAAAAAACAAAAACAAAAAAAACCCCAAAAGACAAATATCTTTTTCTACAACCCCTAAACGACTTGCTCAGATCTCACATTTCTCTCTTCCACTAAACTCGTTTTTTGCATGTTGTTTGTTTGTTTTGGCTTTATTTCTTGATATCATGAGCCCTGCAATATAACAAGCAAACGTATCAGTCTCTTAAGAGAATATACCATCAAAGTTACATTTATGACATCATAGAACAGACTAAGATTGCTCATGCACACTTTACTGAGCTATAAATTCCTATCTGTGCAAGACAGAAACGTACTTCATTGCTGCTTAGATTTTTTTTTAAACTCCGTTTTCCACATTTTCCCTTTGTTTCACTAATGTCTGAGGGTTACAGGATCTTACATTCCAGCAGAGGCTGGCAAGCTAGCAAAGCCTTCAGTGATCCTGGGTAGGGAACTACATTGTATAAATAAGAAGGCATAAGACAGGGGACCAAAATCTATGCCAACCCTGTAGTAACAGTGCGAGCTACAAAAGGCATCTGTTACCCTGAAAACTGGGAGAGAGCAAATAGCTGATTTTTTATCAAATAATTATAAGGTAGCGACAGTAAATCTACCACTCATTCACAGTTAAGATCTTTAAGGCCAGATGGAATTTTGTTGCAAACTGTTATAGATACATAGTGATACATAAAAACAATCACATTAGGATTGGTGAGATGGCTCTACAACTAAAAGCACTTACTGGGCAAGCCTGATGACCTAGTTCACTCTCTGGAGCCCACTAAGGGGAAAACCACAGAAGTGACTACGCACACACACACACACACACACACACACACACACACACAAAATAAAGAAAATAAAATTTCAAAACAATTCCATTAATTCAGAGTGCCCTCTTAAATGGAAACAAGGTAGGATACGTAAGGTAATATCTTTCCCTAGTTTTCAGATCATTGGCTAAAAACCATAATTTTAAAACAGTGATAATTAGAGAAACATCTATTGGCCTCTACAACCCCACCCCAAAATGTAATGCATACAGTGGCCAAAAGTTTTATAGTAATATATCATTTTCTTTTTCTTATCAGATAGTAAACTAAATCAGGACACTTATCAGGATCTCTCTCCCTAAGTGGCGGTCACACAGGAATGGAATATCTTACACCCATTATATCATACCATCCTAACAGACAAAATTGGGAACTAGATCAAAACAACACAACAGTACCTTTAACCGGCTGCCTCATGTGCCAAATCCCAGCAGGAAGAAAAACCTGCGCTACAACACGTTTTGAAAGCAGAGACCAAGCTGGGCAGTGGTGGGCGCACACCTTTAATTCCAGCACTCTGAATGCAGAGGCAGGCAGATTTCTGAATTCGAGGCCAGCCTAGTCTATCTACAGAGTGAGTTCTCAGATAGCCAAGGTTACACAGAGAAACCCTATCTCCAAAAATCAACCAATCAAACAAACAAACAAAACAAAACAAAACAAAACCCAGAAGCCGAACAAGTTGTAACCCAGGAACAAAACTGGAAGAACTTCAAGTTAACTATTGAAAGTGATAAGGAGTGTCAGGAGCTGGGACAGTGAAAATCTTCAAGTGAGTGTAGGATTTCTAGTCTACGCAGTCTTTAAGACTCCTTGGTAAGTCTGTGACTAACTGGAGAATCTGAAAGGCATTCAGGCAGAGGTAACGGAGAGCTAACCAGAATACTGAGATTCATACTGCCTTCAATGAGAATGCCAATGATAAGAGATTAGAGAGACCCTGGAATCTGAGAAGACAGAGTTCTAACATTCTAAAACAACAACAGCTGCCTTACATCTCGTCTCCAACCAGCACATTTATAGCTGAGGGGTGGGCAGGGAAGATGATGGCGGAGGAACAGAAGACTGGTATCCAGCCTTTCCCCTTTGGCAATATAGGCAGCCTCATCCCTGAGGTTCATAGTATTGTTACTGCTCTCCTTACTACATCCTATGCTTCTCCATTTGTACAGCAGGGTTCAAACATTCTCTCAGATGTGTCAAGTGCTTATGACCAAGGACTCCCTTATCCTCAAAAATATCACAGAGCGCTGTCCCCATATGAGCACCAACTAGATCTTCTTCTGCCTCCTGCAGCCCCAGACTCAATGAGACACAGCTGGACCCATCTAGGCTACAGTGGAGATCCCCTGTGATTCTGTGCACACCCTCTTCCTCCAAAATCACCCTTCTGCTTGGAGTCCCACTATTTAAACTTTTAGAACAGCGAATGATGGGGAGTCCTTCACATGTCATGTCATGTGCTTTCCTCAGCCTCAGGGTCCTCACTCATTAAGTTTCCGTCTTGCCAGAATGCTGTTGTATGTGACAGGAGATAGACAATGTCTGGGATATTATCTATGTCACATTTGGGACATCAAATGGACCATATTTAAATCCTGTCTGAGTTATATCTGAAGGGCACAATTTGATCATGCCAGACTGCCAAATGTTTATGTCAAGGAAGACCATGTGCGCTGTGGCCATGACAGGTCATGATAACGTATGTCATCAGGTGAAATCAGAGAGTTGCAACAGACACTGTATCCTAGGTCTCTGGGAAGGCCTGTAGAGTATTCTGCTGGGTTCAAATGTGGAAGATGTGTTAGACAAAGTAGGATCCACGTGAAGGCATGATGGGGTATGTGTATAGTCTTTTCTCTACCTGCCGGGGCAGCCTGGTCTGGTCCTTTTCAGTTTCCCTCTTTCTCCCTGCTTTCTCTGTCCTTGTCCTCTTCTTGTCATGCTGAGTTTGGAGGGGGGACTGCACAGCCCTGGCTGAGGGTCCCTATCTCTCCTAAACTCCATTGCCTTCCTTTCCCATGGCTCCTGATTGTCCTCCTGTGTGTCAG
Seq C2 exon
CTGCTGTTGCACCCAAGGAAATGACCCTCTATGGCTTCCTGAAGCCCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043233:ENSRNOT00000066095:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]