RnoINT0046496 @ rn6
Intron Retention
Gene
ENSRNOG00000017680 | Dennd2d
Description
DENN domain containing 2D [Source:RGD Symbol;Acc:1305120]
Coordinates
chr2:209097927-209102419:+
Coord C1 exon
chr2:209097927-209098068
Coord A exon
chr2:209098069-209102243
Coord C2 exon
chr2:209102244-209102419
Length
4175 bp
Sequences
Splice sites
5' ss Seq
GGGGTTAGT
5' ss Score
2.75
3' ss Seq
CCCTTGCATCTCCATTTTAGGAC
3' ss Score
11.15
Exon sequences
Seq C1 exon
AGTTGGAGGGCCCCAAGAAGGTCAAGGATTTAGGGGGCGGGGCTGGCGCGGACGTGGGAGCTGGCGCCGGGCAGTGGAGGGGCCATGGATGGGCTCGGCCGCCGCCTCCGAGCCAGCCTGAGACTGAAGCGCGGCCAGCGGG
Seq A exon
GTTAGTGCGGGCCACAGCGCGCGGGGGAAAGAGGGCGTGGGGGACCTCCGGACCATAGGCTTGGTGCGGCGGCACTGGGGTCAGGAACGTGGAGCAGTTTGGGCGGGATCTGGGAGGGCTGGGCAGGAGGCAGGTGAGCTCAAGGGAGCAGGTAGAGGTCAATAAGAGGACAGACCTGCTGGATCAAGGGGGAGCCTGGTGGCCAGAAACCTACAACGGTTGTGGGGCCCCAAGGGCCACGTGTCCTTCCATCCAGGAAGCTCGTGGTGCAGCCACTTTATGGCTAAAGACCGTCAAGCCCTCCGGGAGGCGCTTCCCTTCCCTACTTAGCAGGCAGTTTTTTCAGTTCCTGAGAATCAGCTTGTCCCTGCCTTGCAGATAACCACGCCACAGAAACTGGTGGCCCCAAACCCTTACTTAGCACTGACCTCCCTGGGGCAGCCAGGTAGATCAGCTCAGCTGGTTCCTCAATCCTGACCTTGAGAGTTCTGACCTGTAAAATGGGAATCTATTTCCCCGTCCAGGGTGGATGGTAGGGATGAAATTAGATGTGTCATCCATCGGTTTCCTTTCTCCGTATCTGGAGCACTTGAAGGGCAATTGGGATTCATTAATGTGTCCATTCATTCAACAAACATCTGTTGCTGTTTGTCTGGCCAGTGCTATGGCTGAGCTGTCTCCCCTGAGTTTGCTCAGACAGTGCCCATGCTTCTGAAAAGAAAAGAAAAGGTTTCTAAGGGTCATTCCCAGAGAGTTCACCCCTTCCTGCATTTGCAAAGTGAAGACATCAGTGGGCCTCTCTCAAAAGAGGCCTCAGTGCTGAGCTCGGTACTTCCTTCTCAGAACTGCAGGGACTTGTGACTGATCTGCTCTTTGTACCTTCTCGCTGCTGCCACCCTCCTTCTCCGGTCTGCTTGTTCTGAGCATGCCTCTTCCACCTACATGCCAGGGAGAGGGCTGCCATGGCTGGAGCAGTATGTAGGGAGGAGATAAGTCCTCTCTTTGCTACAGAGTTCTGGCTTGGTTTTCGTGGGCTTCCTAGACCTGGGTAATCTGTTGCTGAATGGCTGGGGTCTGCTTCCTGGGGCTCAGAGAACGTGTTTCAGTTGGTCTGCTCCTCGCCCCCATAGCAGCATATGGCCAGCAGTGGTAGCTGGGAGACCTTCCTTGGGTTTAGTGAACAGGGAAGCGGGCAGTCTATATGTGCCTGGTCATATAGCACCTGTCAGATCCTATGGGTGTGACTCTTTCACCTTTCCTGTTGTCTTCCTGCTTCCTGGGGATTTCCCCTTCAGCAGTTTTGTCTTAGAGGGGTGTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTTTAAAACACTGGTAGGAAGACTGTTATGGTGATTCTGGGTTGCTGGCAGTTCAGCAAAGAACAAACAACAGCTTTTCGGATCAAGGTTCCCTGAAGTCGCCTCTCTTTCCTTCAGGTGGTTGTGGGAGGGGCTTCCTGGCGGAGGAACAAGTGTAACCAGACTCCTGACTTCCCTAGCAGTGTGGCTCCTCCCTCAATTAAGATTGAGGATATTAATCCATCCCAGGACATTGGGATCAAGTGAGGTGCCTTCTGTTAAACAGGAATTTGATGCATATTGGTCCTCCTCGTGTTTTTCTGTGATAACCTCTTTTGAAAGGGGGAGGAGGAGAAGACACTCATTTGTTGGACTTCTTGAGCCGCAGCCCAAAGGCCTAGTTACTTTACTTTGGTCTGGGATTTCTGACTTCGCTGGTCCCTTGTTTCTCCTGATAAAGCAGGAGGAAATGGAATGAAAAGGCAGCCCCAAGGACTGAGGAAAAGACGTTTCCTGAGGTTCTCGGATGACCAGGAAGATGACTCTGGCCCTCCAAGCCATTTGCTCACCACCCACCCCACCCCACTCCCCACCCCTCCCTACCGTGAGATACTTACTGTGTAATACGTCAGAAGGACAGAGCCTGGACTTGGAATTTTTATGACGTTCAGTTTGTACAGATCCTGTTAATTTTCAATTGTCTCTGAGTGACTTAGTGCCTTGGTGGTTTTCCTTTCTGTACTAAGCACATGCTTGTTCCTTAAGGCAACCGGTAAAGATTATGCAACATGTATATACAGAGTACAAGTAAGACAGGAGGACTACCTGGGTTGTCTTGCTTCCCCATTCTCAAGATTCCAATTCTCAGACTCTGTACTATGATTGGCGCTTCCCCCACAAATCAATTTTCGGTGTCTGAGTCTTGCATTTTACTGGTGCCACAGTTCCAGTGCTCTTAGGACCAGGACGACAGCCTTCCTTCTTACCATAGCAACACACTCCCTCCCAGAGGGCTGCTAATTCTTCTCAGGAGTGGCAGACACAGGCACCAGATCCTTTTGCTTCTTCCCTCCCCATTAAGTTACTTCCTGGCAAAGGCTTTTTTCCTCTTATCCTGCACATTTCCTTATTCAGAACTTCCTGTGAGAAACCCAGGTTATCCGTGACTACCTTCCTCCTGTTCCTCAACCTCTAGACACTGTACTGGGTCTGCTGCTCAACTTGTCCTGGCCCGACCAGAAGAAAAGCTGAGCAGGAGTGGGAGAGGTCTGCTCTGTACCCCTACCCCTGCTGATGTAACCAGGCTCCTACTCTAAGCTGGGGAGGAGTCATTGCTTCCTTTTAGTAAAGATAATGAGAGAAAGGAACCTGCTGGGACCCTGGAATAGTGAGAGAGATCTGTGCCTTAGATCAGGACAGATTATGGGGGACAGGGGAAGGTAGGAATCACCTTCACAGCTATTCTGTAAATATCTGGACCTCTCAGAGGTGGGCTTTGTTCTCTTCACCATGAGACGAGGAATCCTAGGGCTCTTGCTAAAAATTATTAGGACATTTAGAGAATGATTGGGCAAGTCTACTTATCTGAAAGAGGGCAAGGCAGTGGCATCTTGGCTGCAAGAAGTGTTCAGTTCCATGTTCCTGGAGGTCCTGGATGTTTTAGAATTCACCAGTTGGCCTTGCGGGACGTTACGGCTTCCGATGATTATTTGAGAAGGTAATGGTGAGCAGTCAAGGATAAAGGATGTAAAATACCTATGCTGAGCCCCACGAGGCACTGGAGTCCATGGTCTGATGTTTTAAAAGGCATGTCCGACTGCCTGGGGTTGTAAATAATTCACCACATGGTCTGCAAGCTCTGGAATTCAAAGCCCTTAGCCCAGAAGCAGCTGTGCCTTGAGATGTTTGCTCATGACCTTTTCTCTTACCACACCCTGGGGCTCTTGGGAGGAGCCAAGAGCTGAACTGCAGTGCCAGGATGCTGCTTCTGTCAGTGCCCACACTAAGCTGCCTCGTGGGTCCTTTCACATCCGTCTTGCTCAACTACGGAGTACACAGGATGGAAACTGCTTTCTGTCTTTGGGAGACAGCACATGGTTCAGCTCAATAAAGCTGTGATTGGAGACCAAAGCAGAAGGCACCTTCTCAGGCTTTCTGTGGCCAGCCTGAAGGAGAAAGAACATTCATGCCCCCAAAGCTCAGAATGATGGAAGGACAAGGGGTAGGCCGAACCCTCAGGCTGCTCCGAAATCGCTTGCCACGACTTCGAGCAGGTCAGAACTGGATTGCCTACTTCCTTTTTTGGATGATCCTTTTATGGGCTGATTCCTCCTGTAGTGATCCTCTTTTCTCTTTATGTGACCAAATCCACATGGCCTCCATGTGATCAAGCCAGGAGGATTACCTTATCCGTTTGCAGAGCTAGTCATGTCTGTTGCGGAGGTCTTAGTATGGTTACAAACGAATGCCCTAAGGGCCTACTCTGATTATTTAGTCAGGACTCAGAAATATCCAGAACTGCTACAGCAGGCAGAATGTACAGTGCCAGGCACTATGCTTCCAAGAACCTCCACAGCATGGCTCCTCGGTTCCTACATCAAGTGTTTGCTTTTCTTCCTCTGTCACGCCACGCTTTCCAGTTTCCCAGGGCAGGTATGGAAACTGCCCACTTGGCTCTGCTCCTGCCTGGTGCCTGGTGGTGCCTGGTCAGGCTTAGCCCTGTAGCCTTGAGGCATGGTTGTTGTCCAGATTTTCACACACACTACCGAATGGAGGAATGGAAGGAATACTCACGGGGCCCTTGCATCTCCATTTTAG
Seq C2 exon
GACAATCCCAGAACAATCCTGGGGATGCTGTCACAGAACCGGAAAGAATCCAGGAGCATTCTCCACCTATCTTTGCTGGAGGCCAGCACTTCTTTGAATACCTTCTTGTTGTTTCTTTAAAGAAAAAGCATTTAGGGGATGATTATGAACCCACAATCACCTACCAGTTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017680:ENSRNOT00000023807:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.350 A=NA C2=0.356
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345613=uDENN=PU(12.7=15.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]