RnoINT0047104 @ rn6
Intron Retention
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80848092-80848378:-
Coord C1 exon
chr3:80848278-80848378
Coord A exon
chr3:80848172-80848277
Coord C2 exon
chr3:80848092-80848171
Length
106 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
AGGGCCTCCCTGTCTTCCAGCTG
3' ss Score
8.13
Exon sequences
Seq C1 exon
TCAGCAGCCAGTTCCTGAGCAGCTGAGGATCCAAGTGAGCAGGGTCAGCATGCACGACTACGAGGCTCTCCATTATGACAAGGAGCAGCTCAAGGAGGCCT
Seq A exon
GTGAGTGGCTGCAGCATTGGGACAGGGAGGGATGAGCAGCCGCAGTGCTGCCTGGGACATGCACAGGGACATGCAGCCAGCTGCTGAGGGCCTCCCTGTCTTCCAG
Seq C2 exon
CTGTGCCTCTGGGTACTGTGGTGGTCCCCGGAGACAGTGACCTAGAGCTCTGCCGAGCCCACATTGAGAGACTCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737:ENSRNOT00000024280:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCCAGTTCCTGAGC
R:
GCTGGAGTCTCTCAATGTGGG
Band lengths:
178-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]