GgaINT0054700 @ galGal3
Intron Retention
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25815937-25816255:-
Coord C1 exon
chr5:25816155-25816255
Coord A exon
chr5:25816017-25816154
Coord C2 exon
chr5:25815937-25816016
Length
138 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
GTGTGTCCCATTTTGTGCAGCTG
3' ss Score
8.12
Exon sequences
Seq C1 exon
CCAGCAGCCAGTGCCTGAGCGGCTGCGAATCCGAGTGAGCCGAATCAGCATGCGCGACTACGAGGCACTGCACTATGACAAGGAAAAGCTGAAGGAAGCCT
Seq A exon
GTGAGTGACCAGCTGAGTAGCAGAGTGGTGGGAACTGCACTCCCTGAGTCCAGCAGTGCCTGCAGCTGAGCTGTGTGAGATGCTGGGGATCAGGCACAGTCTGCTCCCTGAGTTGTATGTGTGTCCCATTTTGTGCAG
Seq C2 exon
CTGTGCCGCTGGGGATCATCGTGGTTCCAGGGGACAGTGACCTGGAGTTGTGCCGGACCCAAATTGAGAGGCTGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380:ENSGALT00000038374:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.222
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAATCCGAGTGAGCCGAATC
R:
TCCTGCAGCCTCTCAATTTGG
Band lengths:
155-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]