DreINT0056579 @ danRer10
Intron Retention
Gene
ENSDARG00000076025 | dgkzb
Description
diacylglycerol kinase, zeta b [Source:ZFIN;Acc:ZDB-GENE-111104-4]
Coordinates
chr25:7720348-7720631:+
Coord C1 exon
chr25:7720348-7720448
Coord A exon
chr25:7720449-7720551
Coord C2 exon
chr25:7720552-7720631
Length
103 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
GTGTTCTGTTTTCCTTTCAGCGA
3' ss Score
12.25
Exon sequences
Seq C1 exon
TCAGCAGCCCATCGCAGAGACAGTGCAGATCCAAGTGAACCGTATCAGTATGCATGATTATGAAGCTCTCCATTATGATAAGGAGCAGCTCAAAGAAGCCG
Seq A exon
GTGAGTATTTCTTCTTCACATCTTCGCTCTTATACACTGATGTACTCTTGCTTTTGAAATACTAGAGACCAGTCCTAACATGTGTGTTCTGTTTTCCTTTCAG
Seq C2 exon
CGATTCCCATGGGGATAATTACAGTTCCTGGGAACAGTGATTTGGAGACGTGTCGGCAGCATATCGAGAGGTTGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076025:ENSDART00000155016:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.370
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCAGCCCATCGCAGAG
R:
ATGCAACCTCTCGATATGCTGC
Band lengths:
178-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]