RnoINT0047722 @ rn6
Intron Retention
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13122013-13123650:+
Coord C1 exon
chr20:13122013-13122070
Coord A exon
chr20:13122071-13123575
Coord C2 exon
chr20:13123576-13123650
Length
1505 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
3' ss Seq
AGCTGCCCTCCTCCTTCCAGATT
3' ss Score
10.37
Exon sequences
Seq C1 exon
AGTTCGTCTGGTGGAACGGGGTTCTCCGCACAGTCTGCCGCTGATGGAGTCTGGGAAG
Seq A exon
GTAGCATAAGCTGGACTCTTATAACCTGTGGTGTGGACAGTGCTGGGGCACGTGCTCCTAGTGAATGTGTGGGCCGGGCCGGGCCACTGAAATGTGAGATTAGGTCCTCGAATGCTGTGAGCATAGACCTGGAGCTGGAGAGCCCAGATAGAGAAGCAGGAAGAGGCTGCCTCTTTGCAGACACTGGGAGGGGGTGGGGTGGGTAGGCTGTGGATGGATCAAGGGCCCTCACACTTCCAGTCATAAAGGGCAGCTCTGATCCTGGACTGAAGGTGTGAAGTATTCTCTAGTCCAGGATGATAGAAGAGAACAGGCCCCACCAGGGCACAACCAGAGATTTGCCATCAAAGCAAGTCTTGGCCTAGTGAGGTCCCCAGAAACCTCCAGGCAATTGGGGGGGCTAAATTTGCCCAAGAATGGCAAACAGAAGTGTGAGCCCCTTTGGGTCAGCAGAGAAATCCTGGCAGACCAGCATCCTCAGAAGCAAGGAGAGGTCGAGGAGGACTGACTGACTAGGCAGGGAAAGAGTCCTACAGGTCAATGGAGTGGGCACGTGCTGCCTGCCTAACGTCAACCTCTCGACATCCAAGATTATCAGAGGTTCCCGGGGCTGTGCACTTTAGCCCCAGACCCCCACTGGCCACTGCCCAGGCCACAGCTGTCTTTTTAGGGGGCAAGGAGGGAGTCAGAGACAGCCATCCGACATGCTTTCCAGTCCTCGGTGCCCTGAGGAATCCTGTCTATAGCTGTACCCACCGTGTCCACATGTGGCCGCACCACAGCTATTTACACACTGCTCTGCGGAGTAGCATGGGCCTGCTGGAATTGTGTTCTGAGACGGTTGCTCTCGGGGTTCAGGTGGGCCATGGAGGGGTGAGGAGAGGCTCCATCCATGTGTGAGGGAACAGAGTATCTCAGCAGTGTAGAGCCAGGAAACACCTGGTGTCCTTTATTAGTTCATGCGTTCCTGCAGCTCCCCTCTACTTTTCTGAGGTCCACGTTATCATCCTCTGTGTTATTCATGGGGAGCCTGGAGCACAGAGCATGTGGCCAGACTTCAGAAACAGGGTGGTGTGACCCAGACCAGAGAGGACCCCCAGACTGAATGTGGTAAGCTTAGCAGGACACACGGCCACTCAGCTGCCTGGGTCAGCAGAGACGCTCACAGGTGCGGCACCTCTCCCTGGCAGCTCATGCCGAGAGCAGCCTGGGAAGGCCTGTGTTTGTCAGGGAGAACCACCTGAAGCAATGGCTGGAGGATCCTCAGAATGCTCTCCCAGGAAAGAAAGCAGCACCTGTTTTCAGGAACCGGGCCATTTTGCTCAGATTCACAACGTGTTTCTGCTAAAATTTCTTTTAAAATTCAGATCAAATTAGAACAGCGTCTAAACCCCTGATCTCTAGTCAGCCCCGTGGTGGCAGGTAGGGACAAGTGTGTGAGAAGTGGGACTAGCCATCACTACCGCATCCCAGTCACCGGGGCTGAGCTGCCCTCCTCCTTCCAG
Seq C2 exon
ATTCTTCCAGGAGTGAAGGTCATCATCGCACACACTGAGACCAAAGGGCCCCTCGGAGACTCACACCTGGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212:ENSRNOT00000066017:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.0=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(5.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]