RnoINT0048366 @ rn6
Intron Retention
Gene
ENSRNOG00000015085 | Dmpk
Description
DM1 protein kinase [Source:RGD Symbol;Acc:1309825]
Coordinates
chr1:79991616-79992133:+
Coord C1 exon
chr1:79991616-79991711
Coord A exon
chr1:79991712-79991984
Coord C2 exon
chr1:79991985-79992133
Length
273 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TGTGACACACCTGCTCCCAGTAC
3' ss Score
3.85
Exon sequences
Seq C1 exon
GTGTCATGCTTCCGGGAAGAAAGGGATGTATTAGTGAAAGGGGACCGGCGCTGGATCACACAGTTGCACTTTGCCTTCCAGGATGAGAACTACCTG
Seq A exon
GTGAGCTCCGGGTTCAGGTGACTAGGAAAGAGTGACAATTACATTGCCCCAAGTCAGGAAGGCTGGAGAAGGGAGAAGCTGCTCTAGGCTGGGGGGCCGGTAGGATTGTGTCTCAGGTACAGAAGGGACCTTCCTTGAGACAGGAGGTGATATCTGGTTTGGCCTTCCGATGTCTAGGGCGCTCTCACTGTGCGGGGGTGCCCTGTGCTTGGGAACGGGGTGTCTCTGGGAGTCTTGGGGGCTACCAAACCCCTGTGACACACCTGCTCCCAG
Seq C2 exon
TACCTGGTCATGGAATACTACGTGGGCGGGGACCTGCTAACGCTGCTGAGCAAGTTTGGGGAGCGGATCCCCGCCGAGATGGCGCGCTTCTACCTGGCCGAGATTGTCATGGCCATAGACTCGGTGCACCGGCTGGGCTACGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015085:ENSRNOT00000020428:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.5=100)
A:
NA
C2:
PF0006920=Pkinase=FE(18.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCATGCTTCCGGGAAGAA
R:
CTGTGCACGTAGCCCAGC
Band lengths:
245-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]