RnoINT0048640 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:146045594-146048816:-
Coord C1 exon
chr6:146048621-146048816
Coord A exon
chr6:146045699-146048620
Coord C2 exon
chr6:146045594-146045698
Length
2922 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CCTTACTATTCTTGAAATAGCTT
3' ss Score
5.18
Exon sequences
Seq C1 exon
ATTTCCAGACAGTCCTGATGAGGCTGCAGTCTGTCAGAAGTATGCTGAAATGACCACTTTGCTGGATCAATTTGAAAGTCGCATCTATAGTGAATGGAGAAGAAATGTGGACAAAACCTGTGAATTTAATCTGAATCAGCCCTTGGTTAAATTCAGTCCCATAAACGGCCTTCTTAGTGTCAACTTTGACCCAAAG
Seq A exon
GTAGGACTTTGCCTCTCTAAGTGCATTAAAGATGCAGCAACTCTGTCTCTGAAGCTTCCCCTGATGACGGTGGAATTCACTTCGGTTATTTAAACTCTATTTTGGGAAAATGGCCACTCTGGGAGTGGTATAAATTTAAGCTCAAGAAAGTATTTTACAGAGATTTGTTTTTGTGCATTCATGTATGCATGAATGTGTGTTTTTTTGTTGTTGTTTTGTTTTTTTGTTGTATGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTTTGGTTGAACTTAGGACCTCATAGTTTCTAAGCAAACACTCTACCAGTAAGTGCATTTATTTAAACCTTCTTTGTTTATTGCAATGTTCCTTATTGAGTTTTTTTTTTCAAGACCAAGGCCTCACTGTTGCTCAAGGAAAATGTTGATCTACCAATCCTCTCTCTCTGCCTACTAAGTAGCAGGGATTACAAGCCTGTGTTTCTACTCCAGCCTCTTCATTCCTTACTAATTAATTAACATCTTTATCACCCCATACTCACCTGTTGGTGAGCTACTGAAGATGGGGTCTATCCCATTTTTTCTGTGCTCCATATTCTAGCTCCATGTCAGACAACTGGGAACTTAGTAACCTTAACTCAGCTGACTGGTTCCCATAGAGTCTTCCTGCGTGACTTCCGGTCTGTGTATTTTCATAACAAATACCAGGTTGTTTTAATTAAACATGAAAGCCACAGATGAAAAGGAGCAAAGGCCTATCTTTTTTTTTGGGGGGTGGCCATGGTGTTTCTGTTTGCTGTTCTTTCTTTCAAAGGGAAGATAAGCTTGTATCCTGGTGGCTAAATTGATGGTAGTTAAACAGTAATTTAAAATAAAAACAACACATTGACATGAAAAAACATTTTCATGACATGAAAAAATAGCCAGATAAACATCAGGAATGAATAGATTGTTTTTATGCAATAGCTCTTTTGATGACCATGTTGTTATGTAACGAAGGGAGATTTCAAATCTTTTCAATATATCTGCCCTAATTTCATTACATTTTCTGTTGTGTTTTTTGTTGTTTTGTTTTGTTTTGTTTTGTTTTTAAACTTGGTCTCTTGGGGCTGAAATTGGCATGATCTTCCTGACTCTACTTGTGTAGTGTTGGGTTATAGCCATGCTTCTCCTCACATGGCTGACTATATTAGCAAGAGAGAAAGAGAGGGTAGATAGATAGATAGTGTGTATTTCATATGTGCATAATTAGTAAATATGTGTATATATGTCTCCCACACACACATACATATATTTTAATCGACTGATAGATTGACTTTTTTTGAGACATGGTCTCCTTACATAGACCAGGCTGACCTCAAACTCAAAGAGATCTACCTGCCTTTCCCTCTCAAGTGTTGGTTGAAGTTAGACATGTGACCAACCATGCCTAACCACATGTTCCATGTACAACATATATTTTAAACAGCCTATCTCATGGTCTTTTCACTTTCTAGATAAGAAGCACAAAATTGTTTTTTTTTTCTATTTACCTACCTTGAATTTGCATGGTAGTAAAGGCAAGCTTCTTTGTAACTTTCTGGTACAAAAAAAAAAAAATTGGCGAATTTCAGATAATGAAGAACATTCAGTATTGTGGAGGTGATTGCCCAGAGCTCTCACTAGAAATCCCAATGAGTGCCTAGGGAGTGGGAAGTTGGCTTAATGAATTAGAGGGCCATGATGAACACCCAACTCTGGTCTATTTTCCTAAAACAAATACAAATACCATAATCACCTTATTTTGCTAATGAAAATTTTATACGCCAACATATTCTATGCAGAAAGCTGAGTACTAATTTCTGATTTCATAAAACTAGTCTCCCTGTCCTACACCTCCCAGGTAGATTTAGTGGGTGGTGTTTCAATCACTTAGATGTCATGGATGGGTAGAAGAGATGTCTCTTGGACATATTGTAGATATTACATGTTCTGAGTTTAATTTTTTTCTGAAAATTGCAATAAATTCATAATAGATAAATAGCAAAATTTTACTATAAACATGAGAACAAGTATAAAAACAATTGCTTGAAATGTTTTTTTTTGGGGATAATTGAGAGTCTTGTGGGTTTAAGTACCTTTAAAGTCTTGTTCTCCCTTCAAGAACAACTGTGAGAATTAGAGGCATCCACCATGCACAAAGAACCATTAGAAACATCAAAGAACCATTAGCTCTCATTGCATGCAGTGTGTGGATTGTGCAATGCTCAAATTTTAAGACAGAACTTTAATTAACCCAAAATGACATATGCTGTAAATACAGCCCTATGTTTAATTGTAATGACATAGGCTATAAATACAGTAGTGCATGTGTGCGTGTGCGTGTATGTTTATGCATGCATGAAGACAAGCATTCTTCTTATGTAACAAAGTGTGTTGCAAAAGTCTGTTCACTTTGAACCAGAAACACAGTAGTTGCTAGAAGACATTTAATTATTTCAAGTCAAGATCAGCTTAACCTTGAAAGGTTTTCTTATTTTTTTAGATTTTTATTACGTGGGGGAGAGGGAGAGAGAAAGCAGATAAGCGGAGCACATGGGGTAGGTCAGAGGACAGCTTCGCAGGAGTAGTTTTCCTCCTTGCTTCTGAGATTGTCTCTTGTTTCTACACCAACTCCATGAGCTTCCAGCCCGTCCTCCTCTCTCCACCTCATGTGACTGTAGGAGTTCTTAGAACGGCTGGATACATGAGCACATCTGAGTTTTTCCATGGGATCCAAGGACTGTGTTAAAGTTGTCAAGTCTGCATAGCAAATGCTTCTACTCATTATTTACCTCATTGGCCCAGAAATGTATTCTTAAAGTATGAAATAATCCTTACTATTCTTGAAATAG
Seq C2 exon
CTTGTGGCGGTACTGAGAGAAGTCAAATACCTTTTGATGCTGAAGAAGTCCAACATACCAGATTCGGCTTTAGGCATTTTCCAGAAAAAGAACATTATTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.2=100)
A:
NA
C2:
PF083857=DHC_N1=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]