RnoINT0048773 @ rn6
Intron Retention
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2385014-2386470:+
Coord C1 exon
chr16:2385014-2385203
Coord A exon
chr16:2385204-2386397
Coord C2 exon
chr16:2386398-2386470
Length
1194 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
AACACTTATGCGTATTTTAGTAC
3' ss Score
5.31
Exon sequences
Seq C1 exon
TTAAACTACATATTCATGAAGCAGTGTGTAGAGAGTAGCCCTATAGTACCGATTCAGCCACAGTGGCTGGACCACATGTTAATGCTGATACCTGAGCACCTAAAGGAAGGGAAAAAAAGAGAAGAACTGCTCGGAAGTCTCATAAATGAGGTGTCAATGGACTTTGAAAAAAGCATGAAGAGATATTTGG
Seq A exon
GTAAGTAACATTTGGCACACACCAAGCTTCTTTTACCGCTGCCCATGCGCACATCTGTAATACCAGCCCTTGAGAGCTAAAGTTGGGGGAAAAGAGTTGAAGGTCATCCTCAGCTGGACAGTGGGTTTGAGACCAGCCTGGGCTACATGAGATCTTGTCTCAGAAAAGCAAAATAACTCTGGCAGTGGAGGCACACACCTTTAACCCCAGAATTTGGAAAGCAGAAGCAGGCAGATTCTGAGTTCAAGGCTAGCCTTATCTACCCAGTGAGTTCCAGGACAGCCAAAGCTACACAGAGAAACCCTGTTTAGAAAATACTAAAAGCAAAACAAACAGAAACCAAATACAACAAAATAGTAGAAGTAAGTTGAATATTGAACAATACATATTTTAAATGCATGTGTTTCTTCAATATAATTTCTACCTACATTTTATTTTTGACATTACAATCTAAAGACTTTGTAATTTAAGGGTACCTTTTGTATTTATCAGCTAATATTTATTGCTATTTGATTTTTCACTTTGTCCCTATGGTTTGAGATATCCTATTTTTATAATTGTCAGAAAACATTAATGTATTTTAATCTTTGTAATTTTTATTGGAATGTTGTTGTTGCTTGTGAGACAGAGTATCACTTCTCAGCCATAATAATGCTTCAAAATAATGTATGCATTAAATTAGTTAAACTAAATTAAATATTTTAAGGTGAACCAGTTAACATCATCTATGTGCTGAAAATGCTTAAAAGTACTGTTAAGTATTTGTAAACAGTGTGTTTTTTTTTATCTTCATAATATTGTATAATAGTGCTCCAGTGTTTTCCTCCTAGCCAGCTGAAATTCTCTAACCTTTTACTAACATTTCTGCAACCCCCATCCCCCCCAATCCCTGGTAGCTATCTTAGAATGAATTTCTTAAATGGCCATGCCAATGATCTTTGAACAGATAGAATGAAAAGGACTGAGACCTAAGGAGTGTCTCTGTATTGGAAGCCACCTTCAAAGGAAGGCCAAAATAATGCTAAAAGCTTGCTTTTGTGCAAGAAAGGGAGTTTTCCCTCATATGTATTTTAATGTACAACAAACTCTACCTTACAATATCAAGTTAGAGACTTAGATTACAAAAACTAACTTAATTAGAGAATAGATCTTACAAGGATTTTCAGGACATATTAACACTTATGCGTATTTTAG
Seq C2 exon
TACAGAGTGTTCTTGTGAAACCTCCAGTTAAATGGCTTGAAGATGAATGGGGCCCTTTGCCTGAATCTCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865:ENSRNOT00000079215:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACATATTCATGAAGCAGTGTGT
R:
CAGGAGATTCAGGCAAAGGGC
Band lengths:
258-1452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]