HsaINT1011362 @ hg38
Intron Retention
Gene
ENSG00000174844 | DNAH12
Description
dynein axonemal heavy chain 12 [Source:HGNC Symbol;Acc:HGNC:2943]
Coordinates
chr3:57509140-57510979:-
Coord C1 exon
chr3:57510790-57510979
Coord A exon
chr3:57509213-57510789
Coord C2 exon
chr3:57509140-57509212
Length
1577 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
AATATATCCATGTATTTTAGTGC
3' ss Score
6.32
Exon sequences
Seq C1 exon
TTCAACTATATTTATATGAAGCAATGTGTAGAAAGTAGTCCTTTAGTACCTATTCAGCAGGAATGGCTGGATCACATGTTAAGGCTGATACCTGAGTCTTTAAAGGAAGGGAAAGAAAGAGAAGAACTTCTTGAAAGTCTCATAAATGAGGTGTCAAGTGACTTTGAAAACAGCATGAAGAGATATTTGG
Seq A exon
GTAAGTAGCATCTAACACACACCAGGCTTCTTTCACCTTGGCCTCCCCCCGTCCCCACTGAATCAAAAATAGAAATAAGCAAAATGAGTAATGAACACTATGTATTTAAACTATATCTGGTTTTTTTCTTCTTTTCTTTTTATTTTTTTTCTTCGAGACATGATCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCTATTTCGGCTCACTGCAGCCTCCGCCTGCTGAGTTGAAGCGATTCCCCTACCTCAGCCTCCCGAGTACCTGGAACTTCAGGCACACACCACTATGCCCAGCTAATTTTTTTATTTTTTGGTAGAGATGTAGTTTCACCATGTTGACCAAGCTGGTCTAAAACTCCTGGGCTCAAGCCATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACACGCTGAGCCACTCAGCCCAGCCTTAACTATATGTATTTCTTAGATACGATTTTTATTTAAAGTTTTTATTTTGAGTCTATACTTAAGTCAAAATCCTTACAATTTAAGGGTACTTTTTGTATTTTTTTTATTAGCTAACTTCTCTTTGATTTTTTACTTTGTCTTTATGATTTTAGCTATACTATTTATAGGTTTGCTAGAAAATACTAATATGTTTTGGGAGATTTATTAGGGGTATAATCTTTGCTATTTTTTAGAATAAACTTTTTTCCTTTTTAAAAATTGACAAATAAAAATTGTATATAATTATCATGTACAATACGTTTTGAAATATGTGTGGAATAGCTAAATTGAGCTAATTAACTGATGCATTTTTTTCACATATTTATCATTTTTTGTGTGTGGTGGGAACATAAAATCTACTCTTGACAATTTTCAAGGGTACAATAAATTGTTACTAACTAGTCACTATGTTGTATAATTGCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATGATGGAGTCTCACTCTGTCGCCCAGAATAGAGTGCAGTGGTGCAATCTCAGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCGATTCTCTTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCTGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCTAGCCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCCTCCTTGGCTTCTCAAAGTGCTGGAATTACAGGCATGAGCCACCGCGCTCGGCCTCCATGTCGCGTAATCTCTTGAACTTGTTCCCTCCTATCTAACTGAAATTTTGTAGCCTGTGACCAACATCCTCCCAGCCCCTGGTAGCCACCATGAAATGCATTTTTTTAAGTGGCCATGCTAGTGACTTTTGAGTAGATGGAATGTGAAAAACTGAGATCTTATTAAAGCTTTTCGTTATCTGAACTCTCAAGTAAGGCCAAAATACTACCAAGAACTTGATTTTGTTTCAAATAAAGGAGTTTTTTCTTACATTCCTTTTAATGCACAGTAAACTATACCATCCAAAATCAAAAGTTAGAAACTTTGATATTAATAGATTGTGCAGAGATTTTCAAGAAGCATTAATATATCCATGTATTTTAG
Seq C2 exon
TGCAGAGCGTTCTTGTGAAACCACCAGTTAAATCGCTTGAAGATGAAGGAGGTCCTTTACCTGAATCTCCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174844:ENST00000613504:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.480
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCAATGTGTAGAAAGTAGTCCT
R:
ACAGGAGATTCAGGTAAAGGAC
Band lengths:
247-1824
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains