RnoINT0048798 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107097687-107098577:-
Coord C1 exon
chr10:107098452-107098577
Coord A exon
chr10:107097848-107098451
Coord C2 exon
chr10:107097687-107097847
Length
604 bp
Sequences
Splice sites
5' ss Seq
ACCGCTAAG
5' ss Score
-27.76
3' ss Seq
TCTTTGGGTTCCCACTGCAGGTG
3' ss Score
9.98
Exon sequences
Seq C1 exon
ATCAGCCAGCTGAATGCGCTCATTACTCTGCTCATCGGGAACCTCAGCGCTGGTGACAGGATGAAGATTATGACCATCTGCACCATCGATGTGCATGCCCGAGACGTGGTGGCCAAGATGATCACC
Seq A exon
GCTAAGGCAGGAGCACCCCTGTCCCAGGCACTGGGGAGGCAGGAGTCCCTGGGGTGCTGGGAGGGGCTGGGAACTGGGTTTGGGGCTGGCCCCACACTCAAAAACTCTGGCGTTTATGACCTCCTCTTCCCAGGGTTGTGACTGAGGGAGTGGCCGTCCCCCTCTCCTCCACCACACACACAATCCATGGGGGTCAGATGAGTGGAATGTCATTCTTTTGTGTGTGTTCATGTGTGTGCATGTGCATGTGCATATATGTGTGCATATATGTGGTGGCCCAAGAATGACCTTAGATGTGGCTCCTCAGGTGCCATCCACCTTCCTTTTTGGAGACGGGCTCCCACATTGGCCTGGAACTCAGGCCCAGGGCCCCCCTGACCTCACCTCTCCAGCCCTGGGATTGCAAGCACCTGCTGTCACACTGGCTGACTCTGTTACACGGGTTCTGAGGATTGAACTCAGCAAGTTCTTTACTGCCTGGGCCAACTCCCAACCCTGGAAGCTCCTATCTATAGCAGGCTGCGGCCAGGGTCATTAAAACAGTTGTGCTTCAGATTGAGAGGAGGGCCTGGAGCCAAGACCTTTCTTTGGGTTCCCACTGCAG
Seq C2 exon
GTGGAGAGCTCCCAGGCCTTCACCTGGCAGTCACAGCTTCGACACCGCTGGGACGAGGAAAAGAAACATTGCTTCGCCAATATCTGTGACGCCCAGATCCAATACTCCTATGAGTACCTGGGCAACACGCCTCGGCTGGTCATCACCCCCCTCACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127742=AAA_6=PU(8.2=35.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAGCTGAATGCGCTC
R:
GTGATGACCAGCCGAGGC
Band lengths:
270-874
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]