HsaINT0049538 @ hg19
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76497266-76497955:-
Coord C1 exon
chr17:76497824-76497955
Coord A exon
chr17:76497427-76497823
Coord C2 exon
chr17:76497266-76497426
Length
397 bp
Sequences
Splice sites
5' ss Seq
AAGGCATGA
5' ss Score
1.35
3' ss Seq
AGCTCCGGCTCATCCTGCAGGTG
3' ss Score
9.22
Exon sequences
Seq C1 exon
ATTAGCCAGCTGAACGTACTCATCACGCTGCTCATGGGGAACCTCAACGCTGGCGACAGGATGAAGATCATGACCATCTGCACCATCGATGTGCACGCACGGGACGTGGTGGCCAAAATGATCGTGGCCAAG
Seq A exon
GCATGAGCGCCCCTGTCCCAGGGGCCAGGGGAAGGGCAAGGGGACACCGGGTTCAGGGCAGTGCATTCAGGGACTTCAGACCCTGCCACTTCCTCTTCCTGGGGCACTGACTCTGTTGCTGGCTGCAGCTGCCTCCTAACCTCCTTGCCCGGACTCACCCCTGGTGAGCAACACACAGCAGTCAGATGAGCGGTGCCCGCCCATTGGAAGTGCCATTCTGTAGCGAGATTCCACTGAGGGTGGCCATACAGTTGGATGTGGGTGCTGGAGGGGGAAAGAGGGCCAGGGAGGGTTCCCTGGGCAGCAGGGGACCGGCCTTGGAGGCATGCTGGCCTTCCTTAGGCAGCCCTAGCTCTTGTATTCCACCTGGCAACAAGAGCTCCGGCTCATCCTGCAG
Seq C2 exon
GTGGAGAGTTCTCAGGCCTTCACCTGGCAGGCCCAGCTCCGGCATCGCTGGGACGAAGAGAAGCGACACTGCTTTGCCAACATCTGCGATGCCCAAATCCAGTATTCCTATGAGTATCTGGGCAACACGCCGCGGCTGGTCATCACCCCACTCACTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-DNAH17:NM_173628:34
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127742=AAA_6=PU(8.2=35.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCTGAACGTACTCATCA
R:
TGTCAGTGAGTGGGGTGATGA
Band lengths:
288-685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)