HsaINT0049538 @ hg38
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein axonemal heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr17:78501184-78501873:-
Coord C1 exon
chr17:78501748-78501873
Coord A exon
chr17:78501345-78501747
Coord C2 exon
chr17:78501184-78501344
Length
403 bp
Sequences
Splice sites
5' ss Seq
GTGGCCAAG
5' ss Score
-14.16
3' ss Seq
AGCTCCGGCTCATCCTGCAGGTG
3' ss Score
9.22
Exon sequences
Seq C1 exon
ATTAGCCAGCTGAACGTACTCATCACGCTGCTCATGGGGAACCTCAACGCTGGCGACAGGATGAAGATCATGACCATCTGCACCATCGATGTGCACGCACGGGACGTGGTGGCCAAAATGATCGTG
Seq A exon
GCCAAGGCATGAGCGCCCCTGTCCCAGGGGCCAGGGGAAGGGCAAGGGGACACCGGGTTCAGGGCAGTGCATTCAGGGACTTCAGACCCTGCCACTTCCTCTTCCTGGGGCACTGACTCTGTTGCTGGCTGCAGCTGCCTCCTAACCTCCTTGCCCGGACTCACCCCTGGTGAGCAACACACAGCAGTCAGATGAGCGGTGCCCGCCCATTGGAAGTGCCATTCTGTAGCGAGATTCCACTGAGGGTGGCCATACAGTTGGATGTGGGTGCTGGAGGGGGAAAGAGGGCCAGGGAGGGTTCCCTGGGCAGCAGGGGACCGGCCTTGGAGGCATGCTGGCCTTCCTTAGGCAGCCCTAGCTCTTGTATTCCACCTGGCAACAAGAGCTCCGGCTCATCCTGCAG
Seq C2 exon
GTGGAGAGTTCTCAGGCCTTCACCTGGCAGGCCCAGCTCCGGCATCGCTGGGACGAAGAGAAGCGACACTGCTTTGCCAACATCTGCGATGCCCAAATCCAGTATTCCTATGAGTATCTGGGCAACACGCCGCGGCTGGTCATCACCCCACTCACTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775:ENST00000585328:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127742=AAA_6=PU(26.0=35.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGCCAGCTGAACGTACTCA
R:
CTGTCAGTGAGTGGGGTGATG
Band lengths:
286-689
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development