MmuINT0050754 @ mm9
Intron Retention
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117949444-117950395:-
Coord C1 exon
chr11:117950270-117950395
Coord A exon
chr11:117949605-117950269
Coord C2 exon
chr11:117949444-117949604
Length
665 bp
Sequences
Splice sites
5' ss Seq
ACCGCTAAG
5' ss Score
-27.76
3' ss Seq
CCCCTGGGTTTCTGCTGCAGGTG
3' ss Score
10.79
Exon sequences
Seq C1 exon
ATCAGCCAGCTGAATGCGCTCATCACTCTGCTCATTGGAAATCTCACCGCCGGTGACAGGATGAAGATCATGACCATCTGCACCATCGATGTGCACGCCCGAGACGTGGTGGCCAAGATGATCACC
Seq A exon
GCTAAGGCAGGAGCACCCAGCCGTGCCCCAGGCGCTGGGGAGGCGGGAGCACCCGGGATGGTGGGAAGAGCTGGGAACCCAAACACTCAAGAACTCCAGTGTTGACAACCTCCTCTTCCCAGGGTGGTGACTGAGGGTTAGGGCTGTCCTCTACACACACACACACACACACACACACACACAAAATCCATGGGGGTCAGATGAGTGGACTGCTAGAAGTTTCCATTCTTGTGTGTGTGTTCTTCTTATGTGCGCAGGCACATGTGCACGTATGTGTGCATACATGTGGCAGCCCGAGGATGACCTTAAATGTGGCCCCTCAGGTGCCATCCACCTTCCTTTTTGGAGACAGGCTCTCATATTGGCCTGGAACTCAGGCCCAGCCCCCACACTCCACACCCCACACTCCACACCCCACTCCCACCTCATCTTCACTTCCTCAGCCCTGGAATTGCAAGCACCTGCTGTCACTGGATGACTGTCACACCACATGGGTTCTGAAGATTGAACTCAACAAGTTGTTTGCTGCCTGGGCCAGCCCCCAACCCTGGAAGCCCCTATCTGTAGCAGGCTGCGGCCAGGGGTATTGAAAGAGTCATGTACCCGACTGAGGGGAGAGCCCCCGGGACCGGCCTGGAGCCAAGACCCCTGGGTTTCTGCTGCAG
Seq C2 exon
GTGGAGAGTTCGCAGGCCTTCACCTGGCAGTCGCAGCTTCGACACCGCTGGGACGAGGAAAAGAAGCACTGCTTCGCCAACATCTGTGACGCTCAGATCAAATACTCCTACGAGTACCTGGGCAACACACCTCGGCTGGTCATCACCCCACTCACAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-Dnahc17:NM_001167746:34
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127742=AAA_6=PU(8.2=35.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAATGCGCTCATCACTCT
R:
TATCTGTGAGTGGGGTGATGACC
Band lengths:
278-943
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: