RnoINT0048808 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107087821-107088770:-
Coord C1 exon
chr10:107088643-107088770
Coord A exon
chr10:107087970-107088642
Coord C2 exon
chr10:107087821-107087969
Length
673 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAC
5' ss Score
7.56
3' ss Seq
GCTTGCTTCGTCCTCCCTAGGTC
3' ss Score
11.09
Exon sequences
Seq C1 exon
GCCTGTTCTCAACCATCATGCGGGACCTGGCCAACATCACGCACGACGGGCCCAAGTGGATTGTCCTGGATGGAGACATAGACCCCATGTGGATTGAGTCTCTCAACACAGTCATGGATGACAACAAG
Seq A exon
GTACACTACTCCTGGATTCACAGCCGAGCCCCCATCACCACCACAGTATGAGAGAGCCTACAGGCCATGGGCAGTGTACACTCAGTGCTGGGGATGGTGGGGGTGGGGCAAGGTGGCCAGGAATCTGTCAAAAGCCCCACAGAGAAAGTCATGGACTGTAGACAGCACCTGCCACAACAGTCGCTCCCTATGGAGGACACAGAACCATGCGCTCCTGAACCTGCCTGTGGTTCTGCCTCTGCGCGGGTCGGAGTAAAGCTGGAGGCTCGTTCTCCACCTGATTCGTGCGCAGCATAGAAACAATACTTGGCGGGGCAGAAACAGCCTCCAGAGCAGTCTAGAAGCAGCTTAAGAAAATGATTCTTCCCAGTACTGGGGAGGGCAGGCAGGAGGATCATGAGTTCAAGGCCTGCTTGGGCTGCATAGCCAGGCTCTGTCTCAAAAGCAGGGCTTCTCCGCTGGATAGGAGACACAGAAGGATCTATAGAGGAGAGGGTTGTGGTTTTAGAAGGATGCCTGTGTTAGCTGGGCATGCACGCAGGCAGGTGCGTAGTGAAGGGAGGCTGGAGGCAAAGAGAGCCGAGAGAGTCATGGTGGCTACACATGTGCCACCTTCAGTGGCTTCTCCTCTGGGGACTGCCACTGACCAATGGGCTTGCTTCGTCCTCCCTAG
Seq C2 exon
GTCCTCACCCTGGCCAGCAATGAGCGGATTCCCTTGAATCGCACCATGAGGCTGGTGTTTGAGATCAGTCACCTAAGGACAGCCACCCCGGCCACCGTCTCTAGGGCCGGCATACTCTACATTAACCCTGCCGATCTGGGATGGAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(30.7=100)
A:
NA
C2:
PF077289=AAA_5=PD(25.5=70.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTTCTCAACCATCATGC
R:
ATCCCAGATCGGCAGGGTTAA
Band lengths:
270-943
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]