GgaINT1011507 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10083966-10084352:+
Coord C1 exon
chr18:10083966-10084093
Coord A exon
chr18:10084094-10084203
Coord C2 exon
chr18:10084204-10084352
Length
110 bp
Sequences
Splice sites
5' ss Seq
AAGGTCGGT
5' ss Score
7.13
3' ss Seq
TGACAAGCCACTTCCCCCAGGTC
3' ss Score
4.99
Exon sequences
Seq C1 exon
GTCTGTTTTCTTCAACGATGCGTGACCTGGCCAACATCACACACAAGGGGCCCAAGTGGATCATCCTCGATGGTGATATTGACCCCATGTGGATCGAGTCCCTGAACACGGTCATGGATGACAATAAG
Seq A exon
GTCGGTGCCATCGCGCCCAAGGAGCTAGGCTTGTGAACTGAGGACGATAAACCTCTTTGTGCCCGCTCCCCAAAATCAGAGCTGCCCCTATGACAAGCCACTTCCCCCAG
Seq C2 exon
GTCCTCACCTTGGCCAGCAATGAGCGCATCCCCCTCAACCCCACCATGCGGCTGCTCTTTGAGATCAGCCACCTGCGCACCGCCACGCCAGCCACCGTGTCCCGGGCAGGGATCCTCTACATCAACCCCGCAGACCTGGGCTGGAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(30.7=100)
A:
NA
C2:
PF077289=AAA_5=PD(25.5=70.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCAACGATGCGTGACCTG
R:
TGCGGGGTTGATGTAGAGGAT
Band lengths:
252-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]