BtaINT0050358 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54362313-54363306:+
Coord C1 exon
chr19:54362313-54362440
Coord A exon
chr19:54362441-54363157
Coord C2 exon
chr19:54363158-54363306
Length
717 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGA
5' ss Score
7.16
3' ss Seq
AGGCCCGCGTCCGTCTCCAGGTC
3' ss Score
7.9
Exon sequences
Seq C1 exon
GCCTCTTCTCCACCATCATGCGGGACCTGGCCAACATCACTCACGACGGCCCCAAGTGGATCGTGCTGGATGGAGACATAGACCCCATGTGGATCGAGTCCCTCAACACCGTCATGGACGACAACAAG
Seq A exon
GTGCGAGGGGCCCGCGACCCCGGAGCCAAGCCCCCAGAACCACAGTGACGGGCAGGGGAGCATGTGGGATTCAACACACGTCTCGCCCACCTCACTCAGCACACAGGGCCCGCTGTGGATGGGGACTGAGGAGGGGGCCTGTCTGGAGCTCTGCACAAAGTGTGATAGACGGTGAGGGGCTGGGGGAAGCCCCCATCCCGAGGCACACTCCTTGCAGGACGTAGGCCCACTGAGCCCAAGCCAGCTCAGATGCTCTCTGGGGAGCGTGGGTGAAGAGTGCAGGCACGGGGAGCGTTCCTACCTGACCACGTGGTGGGTGGCACCACGTAGGAGGGGAAGCTAATATCTTGGAAGGTGCAGATGACATCAAGAATCGTCTAAAAGCAGCTTAAGAACGTGATTCTCAATCAGGTGGAGGAGGGAACCCCAGTGTTCCCCAGGAAAGGGAGGAGGAGTCCTGGTTTGATGAGGCAAATTTAACCCCAGAGTGAAGTCCTACATGGTCCAAGCACGTCTGGGTGCTCTCCATGGCCCTGGAGTGGGAGGGGGTGCTGACATCTGGGACGGCAGAGAGATGCTGAGTTAGGGAAGCGGTTGGTGGCTGGCAGGATGCAGAGGGTGTCTCTGGCCTCCCCCTCCTCTGAGATGGGTCCTGTGGCCGCCTCAGGACGAGGGCACTCTTGCAGCTGAAACCCACAGGCCCGCGTCCGTCTCCAG
Seq C2 exon
GTCCTCACCCTGGCCAGCAATGAGCGGATCCCCCTGAACCGCACCATGCGGCTGGTGTTTGAGATCAGCCACCTGAGGACAGCCACGCCGGCCACCGTCTCCAGAGCCGGCATCCTGTACATCAACCCTGCCGATCTGGGCTGGAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(30.7=100)
A:
NA
C2:
PF077289=AAA_5=PD(25.5=70.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTTCTCCACCATCATGC
R:
GGTTCCAGCCCAGATCGG
Band lengths:
276-993
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development