HsaINT1011337 @ hg38
Intron Retention
Gene
ENSG00000105877 | DNAH11
Description
dynein axonemal heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr7:21710553-21711860:+
Coord C1 exon
chr7:21710553-21710703
Coord A exon
chr7:21710704-21711711
Coord C2 exon
chr7:21711712-21711860
Length
1008 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
CAGTGTGCTGCTCACTCCAGGTG
3' ss Score
7.46
Exon sequences
Seq C1 exon
GATTGTTTACTCTTATTTTATAGGTCTCTTCTCATCCATTCTACGAGAACAAGCAAATCTTAAGCATGATGGACCAAAATGGATAGTCCTGGATGGCGATATTGACCCCATGTGGATTGAATCACTGAATACTGTAATGGATGATAACAAG
Seq A exon
GTGAATAAAACCTCTGTTCTCAACCTTAAATATAACATCCTGAGTGTATTAAGAGTTCGATTCACTTGTCGATGTTAATACTAGTTTTTGCTCATTAACCTGGGATTCTTTATGTAATTATTATTTTGATAAGTGTTGCTTTCCTGATAATTTTCTTAATTTCACCATTAAAGAATTTCAAGGAATATGTTCTCTTTGTTTCTTTGAATTCAGCCACCTTTACTGAGAGTTAGATACAGATCTAAGAATTTAGTTTACAGATCTTACCACTTTCTAAGAGGTAGCCGTAAATTATTGTATCTTGTCATCTTTGATTAAGTATAAATACTTAGACAATGAAAGAACGGGTTTGTGCCATATGATGATTGAAATTAACTAGTTCCTTTGGCTATGGATTGAGTTAAAATGTTTTCCCAAGCTTTTTTGCCACAGTTAATTCAGCATTCCCAGCAAAAACAAAAGGTGACGGTACAGGTCTGTGAGATATCAGTCAAGCAACACAGGGTCTGTTGTTGGGGTCAGCAGAGAGAAATCAGTAATCATCATTACTCCAGAGAAGATTTAGTAACCACCTTAAATTAACAGTAATTACTGCTTACTCAACTGAGACACTGTTCATCATAAAATACAGGTTTGGGATCTTTATACTTGTGTAAGTTTCTTTGGACAATTGATAATTGTGGTATTTCAGATTCTAAAGAAAAGTTTATGGTATTCAGGTCCTTTCATGTGATTAATTTTTACAATACATGTCTTATATTTGGCTTAGCAATAAAAATTACTACAATTATGTAAAGGTCGACATTCACAAGTCCATTTAGGTGAGTTTGTTCAAGGGTCAGTCAGGTCATCTCAGGGGTGAGCTTAGATCTTTATTCAGACTGCACTTCTGATTCAGGAGAGTGAGCACACAGCCTGTGATACTTCTGGTAGGGGAAAGTACTTGTTGCTTCTGGATGTTTGCGGCATTGCTTTTGCCCATGGGTGACAGTGTGCTGCTCACTCCAG
Seq C2 exon
GTGCTGACCCTCGCCAGCAATGAGCGCATTGCACTCACTCCCTTCATGAGGCTTCTGTTTGAGATACATCACTTAAGGAGCGCAACCCCGGCCACTGTTTCCAGAGCTGGTATTCTGTATGTGAACCCACAAGATCTGGGCTGGAATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877:ENST00000409508:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(34.2=100)
A:
NA
C2:
PF077289=AAA_5=PD(24.0=70.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCTCTTCTCATCCATTCTACGA
R:
GATTCCAGCCCAGATCTTGTGG
Band lengths:
278-1286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains