MmuINT0050682 @ mm9
Intron Retention
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119274863-119277264:-
Coord C1 exon
chr12:119277137-119277264
Coord A exon
chr12:119275012-119277136
Coord C2 exon
chr12:119274863-119275011
Length
2125 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
3' ss Seq
CCACATGCTGCTCATTGTAGGTG
3' ss Score
7.2
Exon sequences
Seq C1 exon
GTCTCTTCTCATCCATTCTGAGAGAGCAGGCAAATCTCACACATGATGGGCCAACCTGGATAGTCCTGGATGGGGATATTGACCCCCTGTGGATCGAGTCCCTGAACACAGTGATGGATGATAACAAG
Seq A exon
GTGAAAGACACTGTAGTGCCTCTCCTTGGCGCTATATCCGGGGGCTGTTCAGCTGCTGATATCCACAATCTCCTGTCTCCTCAATGCACTATTTCATATGTAGTCACTGTTTTGATGAGTGATATTTTCTTCATAGTTAAACAAATGATGGTTGGGGGGTGGGGGGTGGGGGAGAGGGCTGGAGAGATGACTCAACACCAACTGCTCTTCCAGAAGTCCTTAGTTCAATTCCCAGCAACCACATTGTGCCTCACAACCATCTATAATGAGATTTGATGTACTCTTCTAGTGTGTGTCTGAAGACAGCTGCAGTGTACTCATATAAATAAAAATAAATAAATCTTTTTTAAAATTTGGGGAATGTTTCCCTTATCTCTGAATTGAATCACCATTCATAAAATTTAGGCACATAGATAAGAATTCAATTTATGTGCCTTATTGTTTTCTAAGAGGCAGGTATTAAATTGCTATATCTTATGTGGTCTGATTAAATATTGATATTGAGACAACAAAAGAATGAGTTTGTACCATGTGATCACTGATGAAACCTGGCAATGCAAATTAAGTTGTTCCTATGGCTACAGATTGTGTTTAAATGCTTTGCCAAGCATGCCATGTGATTGTCCTGGGAACAGCAGAGACAAGAGGTCCCGTGTCATACCAAAAAGGCAATCCGAGACCTGTTGTTGGAGCAGGGTAAGAGTTCAGGAGCCAATACTACTCCTAGGTAGCATCAGTAGCCACTGCTTTCTGAATGAAGACAATGCTTCTCAGAAAACAGAGGTTGGAGCCTACATACATGTATGAGAGAGGACAGGACACTGGCTAACTGCAGTGGTGCACATTCTTAGTTGTGGAATACAGGTCTTTTTTTTTTTTTTTTAAGATGTCAAAGGTGTTATTTACTTTTTAAAAAAAATTTATTAGATATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGTCCCCTATACCGCCCCCTGCCCTGCTCCTCTACCCACTTCTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCTAGACCAAGGGGCCTCTCTTCCCAATGATGGCCAACTAGGCCATCTTCTGCTACATATGCAGCTAGAAACACGAGCTCTGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTCAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCCATCCTATAGATGACTGTGAGCATCCATTTCTATTTTTACCAGGCACTGGCAAAGCCTCACAGAAGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTGACATATACAATAGTGTCTGGGTTTGGTGGCTGATTATGGGATGGACCCCCAGGTGGGGCAGTCTCTGGATGGTCCATCCTTTCGTGTTAGCTCCAAACTTTGTCTCTGCAACTCCTTCCATGGATATTTTATTTCCTATTCTAGGGAGAAATGAAGTATCCACACGTTGGTCTTCCTTCTTGATTTTCTTGTGTCTTGGAAATTGTATCTTGGGTATTCTAGGTTTCTGGGCTAATATCCACTTATCAGTGAGTGCATATCAAGTGACTTCTTTTGTGATTGGGTTACCTCACTCAGAATGATATCCTCCAGATACATTCATTTGCCCAAGCATTTCATAAATTCGTTGTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAGGGATGCTATGGGCACAGTGGAGCATGTGTCCTTATTACCAGTTGGAATTCAGGTTTTATGGTAGTCCACTTACATTTGGGCTAGTAATAGTTCCTATGGCTACTGGAGGCCTGGCCCTCATGAATCTGTAAGGCAATTTTATTCCCTAAGGATTCAGCCAGAGTGCCTCCACATGGGCTCAGATATGAATTCAGGTGAGTCTACCTGTGGCTGTCCTAGTCACGATGGGCATCACTAGTAGGAGCATCATTCATTGTGATGGTCTGTTTGATGTACTGGCTCCTGGTGGTAGCACTCCTCTGGTAACCACCAACCACATGCTGCTCATTGTAG
Seq C2 exon
GTGCTGACCCTGGCCAGCAATGAACGAGTGGCCCTCAAACCTTCCATGAGGCTTCTATTCGAGACCCATCACCTGCGGACAGCCACACCAGCCACGGTCTCCAGAGCTGGCATTTTGTATGTGAACCCGCAGGATCTGGGCTGGAATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-Dnahc11:NM_010060:41
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(30.7=100)
A:
NA
C2:
PF077289=AAA_5=PD(25.5=70.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: