HsaINT0049326 @ hg19
Intron Retention
Gene
ENSG00000105877 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:2942]
Coordinates
chr7:21750171-21751478:+
Coord C1 exon
chr7:21750171-21750321
Coord A exon
chr7:21750322-21751329
Coord C2 exon
chr7:21751330-21751478
Length
1008 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
CAGTGTGCTGCTCACTCCAGGTG
3' ss Score
7.46
Exon sequences
Seq C1 exon
GATTGTTTACTCTTATTTTATAGGTCTCTTCTCATCCATTCTACGAGAACAAGCAAATCTTAAGCATGATGGACCAAAATGGATAGTCCTGGATGGCGATATTGACCCCATGTGGATTGAATCACTGAATACTGTAATGGATGATAACAAG
Seq A exon
GTGAATAAAACCTCTGTTCTCAACCTTAAATATAACATCCTGAGTGTATTAAGAGTTCGATTCACTTGTCGATGTTAATACTAGTTTTTGCTCATTAACCTGGGATTCTTTATGTAATTATTATTTTGATAAGTGTTGCTTTCCTGATAATTTTCTTAATTTCACCATTAAAGAATTTCAAGGAATATGTTCTCTTTGTTTCTTTGAATTCAGCCACCTTTACTGAGAGTTAGATACAGATCTAAGAATTTAGTTTACAGATCTTACCACTTTCTAAGAGGTAGCCGTAAATTATTGTATCTTGTCATCTTTGATTAAGTATAAATACTTAGACAATGAAAGAACGGGTTTGTGCCATATGATGATTGAAATTAACTAGTTCCTTTGGCTATGGATTGAGTTAAAATGTTTTCCCAAGCTTTTTTGCCACAGTTAATTCAGCATTCCCAGCAAAAACAAAAGGTGACGGTACAGGTCTGTGAGATATCAGTCAAGCAACACAGGGTCTGTTGTTGGGGTCAGCAGAGAGAAATCAGTAATCATCATTACTCCAGAGAAGATTTAGTAACCACCTTAAATTAACAGTAATTACTGCTTACTCAACTGAGACACTGTTCATCATAAAATACAGGTTTGGGATCTTTATACTTGTGTAAGTTTCTTTGGACAATTGATAATTGTGGTATTTCAGATTCTAAAGAAAAGTTTATGGTATTCAGGTCCTTTCATGTGATTAATTTTTACAATACATGTCTTATATTTGGCTTAGCAATAAAAATTACTACAATTATGTAAAGGTCGACATTCACAAGTCCATTTAGGTGAGTTTGTTCAAGGGTCAGTCAGGTCATCTCAGGGGTGAGCTTAGATCTTTATTCAGACTGCACTTCTGATTCAGGAGAGTGAGCACACAGCCTGTGATACTTCTGGTAGGGGAAAGTACTTGTTGCTTCTGGATGTTTGCGGCATTGCTTTTGCCCATGGGTGACAGTGTGCTGCTCACTCCAG
Seq C2 exon
GTGCTGACCCTCGCCAGCAATGAGCGCATTGCACTCACTCCCTTCATGAGGCTTCTGTTTGAGATACATCACTTAAGGAGCGCAACCCCGGCCACTGTTTCCAGAGCTGGTATTCTGTATGTGAACCCACAAGATCTGGGCTGGAATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-DNAH11:NM_003777:41
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(34.2=100)
A:
NA
C2:
PF077289=AAA_5=PD(24.0=70.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCTCTTCTCATCCATTCTACGA
R:
GATTCCAGCCCAGATCTTGTGG
Band lengths:
278-1286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)