GgaINT0127364 @ galGal3
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1062188-1062925:+
Coord C1 exon
chr18:1062188-1062315
Coord A exon
chr18:1062316-1062816
Coord C2 exon
chr18:1062817-1062925
Length
501 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
TGTCTGTGTGCCGTATGCAGGTG
3' ss Score
10.11
Exon sequences
Seq C1 exon
GGCTGTTTTCATCAATCATGAGAGAGCTGGCCAACATCACACACGATGGCCCCAAGTGGATGGTACTAGATGGAGATATTGATCCGATGTGGATTGAGTCTCTTAATACAGTGATGGATGATAATAAG
Seq A exon
GTAATTAATATAAATTAAAGAAGCAGACATTCCTTGAACTGCATGGCGTGGTTCCACATGGGAGAAATGCATACACAGAAGTAACACCTCCTTGAATAATGCAGTTATGAAAGTATTTTTTCAGCTATACCAAGCGATGTTACATTAAGAAAAGGATGTGTGAGGAAAATAGCATGCTTTTGTGGGAATTTCCCTTTCTTGGGGTACTGGAATCACGAGTAACCACAGGTGTCCTGACAATAACTGCAGACCCTTTAAAAATAGAGAATAGGGCATAATTATGCACCTTTTCCCTCACCCCAAGGGAGTGCTGTTCATTCTGGGCTGTGGAACAGAGGGATCATTGCACTGCCTGTAGGAAATCAGTTGCTGTACTTGGAGGAACTGATCTGACAGCAGCCGGGCTTTTGAGTGCAAAGTACTGAGCGCTTGTCAGTCCTGTTCCTGGGGATGCATTAAGCACAGAATTGTGCTGCTGCTCTGTCTGTGTGCCGTATGCAG
Seq C2 exon
GTGCTGACCCTGGCAAGCAATGAGAGAATCCCCCTGAAGCCAACAATGAGATTGGTGTTTGAGATCAGCCACTTGCGTACAGCCACCCCCGCAACTGTGTCCAGAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000039398:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(30.7=100)
A:
NA
C2:
PF077289=AAA_5=PD(25.5=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATCAATCATGAGAGAGCTGGC
R:
CCGCTCTGGACACAGTTGC
Band lengths:
230-731
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]