BtaINT0050810 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31097422-31100375:+
Coord C1 exon
chr19:31097422-31097549
Coord A exon
chr19:31097550-31100266
Coord C2 exon
chr19:31100267-31100375
Length
2717 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
CACCCCTCCCCCGTGTCCAGGTG
3' ss Score
10.21
Exon sequences
Seq C1 exon
GACTGTTCTCTTCTATCATGCGGGAGCTTGCCAACATCACCCATGATGGGCCCAAATGGATTTTACTGGATGGTGACATTGACCCGATGTGGATCGAGTCTCTGAACACTGTCATGGATGATAACAAG
Seq A exon
GTACCAAGGGGGAAGAGGAGCCCCATGTCATCCCCAATCATGAGTGAAACCAGCTCCCCAGGCACATTTGAAAGCCTGGATTGCACAGTAGGGCTGGCTCTGAGTAAGGAATTATTACTGGTGTCTTTTAAAATTTGGGGGGGGGGGGCTTTATTGAGATAGAGTCAACATATAACATTGTTATAATTGATATAAAACATTGTGTACATTTAAGGTATACAACCTGATGATTTGAAATACTTGTATATTGCAAAATGATTACCACAATAAGGTTAGTTGACAATTCCATCACCTCCCATAATTACCTTTGTATGTGCCTGGTGAGAACTTCTAATATCTATTCTTTTTAAATTTTCTTAAATTGAAGTACAGTATGGAAATTCCTTAAAAAAAAAAAAAAAAAACTAGAAGTAGAACTACCCTATGACCCAACAATCCCACTACTGGGCATATACCCTGAGAAAACCATAATTGAAAGAGATGCATATACACCAGTGTTCACTGCAGCACTTTTTACAATAGCTGGGACCTGGAAGCAATCTAGATGTCCACTGACAAGATGAATGGAAACAGAAACTGTGATACATATATGCAATGGAATATTACTTGGCTATAGAAAAGAATGCATTTGAGTCAGTCCTAATGAGGTAGATGGACCTAGAGCCTATTACACAGAGTAAAGTAAGTCAGAAAGAGAAAGACAAATATCGTATATTAACTCATGCATATGAAATCTAGAAAGATGGTACTAAGATCTATTCTTTCAGCAGCTTTCAAGTACACAGTACAATATTGTTAACTACAGTCACCATGTCTTACATTACTTATTCATCTTATAACTGGGATGTTTATAATTGCCCACCCAATACTCCATCCCTGGCAACCACCAGTTTACTCTCTGAGTTGTTGTTTTTTTTAAGATTCCATAAATAAGTGAGATTATCTATTGTTTGCCTTTCTCTGTCTGACATTTCATGTGCCATAATGCTCTCCAGGCCATCCATGCTGTCACAGATAACAGGATTTCCTTCTTCTTATGGCTGAATAGCGTTTCATTCTGTGTGTGTGTGTGGCATCTTCTTTATCCATTCATCCACTGACAGACACGTAGGTTGCTTCCACCTCTTGGCTGTTGTAAATAGCACTCCGGTGAGGACAGGATGCAGATAACTCTTCAAGATCCTGATTTCAGCTACCCGTAAATGGCAACCCACTCCAGTATTCTTGCCTGGAAAATCCCATGGACAGAGGAGCCTGGCAGGCCACAGTCCATGAGGTCGCAGGAGTTGGACACGACTGAGTGACTTTCACTCTCACTTCATCTTTAACAGGTGTCTCAGAACTGATTCATCCCATACAATAACTTACAGTTATCTTAGAGCCATGCCATCACTCCCGTGTTTTTAGCATTGTTGTAATTTCCTTTAGAATCTTCCACATGTAGATCAATTCAGTATATAGAGCTGCAAAGAATCTTAAATCATTTATTCAAATCTTTTTTCTAAAAGGGATTTTTGTTTGTTTATAAATAAAGGAAACTGATGATCAGAAACATTCTGAGCCTGTCAAGTGTCCTCAGTGGTGGTCAATCTTTATTTTATTTTTTTATAAACATTGAAAACTGACTGCCCATAAAGAGGCTGTAAAGTTGGGAGCACTTAACTTGTTTGGAAAGCACACCCAGATTAGAGGTTTTACGGTGGCTTGAACATGTACGGAACATACTCTTCCAGAGGGAGCCCTTTAAAAGAAACAGTAGTTACATGAAACCTGAGCTCTTTTCCTTTAATTATCAATTTTTTTTAATAGGGTCTGTTGTTGTTATTGTTCATTCACTAAGTCATGTGTGACTCTTTGAGACCCCATGAACTGGAGTATGCCAGGCTTCCCTGTCCTTCACTATCTCCTAGAGCTTGCTCAAACTCATGTCCATTGAGTCAGTGATGCCATCTGACCATCTCATCCTCTGTCACCTCCTTCTCCTCCTGCCCTCAATCTTTCCCAGGATCAGGGTATTCTCCAATGAGTAGGCTCTTCACCGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTTGCTAGGAGTCGGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACAGGGGAGCCTGGTGGGCTGCCGTCTCTGGGGTCGCACAGAGTCAGACACAACTGAAGCGACTTAGCAGCAGCAGCAGCAGGCTCTTCACATCAGGTGGCCAAAGTACTGGAGTTTCAACTTCAGCATCAGTCCTTCCAGTGAATATTCAGAACTGATTTCCTTTAGAATTGACTGGTTTGATCTCCTTGCTGTCCAAGGGACTCTCAAGAGTCTTCTCCAGCACCTCAGTTCAAAAGCATCAATATGGTCCAGTTCATTCAAATCACTGACATCACTTAAACTTTTCAGACAGCTTATTTCCTGACTCAGTACACAGGGATGGTGATCAAGAAGCTACCGAAGGAGAGACAGAGGACTTTGTGGAAACTTTCAAAGATACTTATAATTGTAATGCCTATCAGGAATAAAAGCCAAACTCCCCTGAGCTGGTCTCACACCCTAACTCCTCCCTGCCTGCTGCACCCCTCCCCCGTGTCCAG
Seq C2 exon
GTGCTGACCCTGGCAAGCAACGAGAGGATCCCTCTGAATCCAACCATGAGGCTTCTCTTTGAGATCAGCCACCTGCACACGGCCACGCCAGCCACTGTCTCCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(30.7=100)
A:
NA
C2:
PF077289=AAA_5=PD(25.5=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development