RnoINT0049259 @ rn6
Intron Retention
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52546245-52548728:-
Coord C1 exon
chr10:52548601-52548728
Coord A exon
chr10:52546354-52548600
Coord C2 exon
chr10:52546245-52546353
Length
2247 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCC
5' ss Score
8.33
3' ss Seq
ATCCTTTCTGTGGATTCCAGGTA
3' ss Score
8.38
Exon sequences
Seq C1 exon
GACTGTTCTCTTCCATCATGAGAGAGCTTGCCAACATCTCCCATGATGGCCCCAAGTGGATCTTACTGGATGGTGATATAGACCCGATGTGGATCGAGTCTCTGAACACCGTCATGGATGATAACAAG
Seq A exon
GTATCCTGCTAGGGGTGGTGTGTTTGCCTATGGTAATATGTGGGGGTCGGGGGAGCCCCATGCAATGTTCATCTAAGAAGATAAATTTCCAGTGCAACAGCACACCTGGAAATCTTGATTCCACATCATGGTCAGCCTAGCATAAGCAGCCCTCCCTGGTGTCTTCAGTAAGACACCCAGGACTTACCTGTCCCCACTCAGACCTGCTTAAGAGGCCCTGCCACTGCCCACCCTGTCTTTGGTATGGTTTTCATGACTTTCAGAATCTCCTGTCTGTGGATTCGTTTAATATTTAGAGCTGAGAAGAATGTTAGTCATCCATTCAAATCCTTTTTATAATTCGTTTCCTCTTAATAAATAAGGAACTAAATATCGGAAACATCCTGAGTCTGTCAAACACCCTATGGGATGATAAATGTCTATCCTCAAAGAGTAAACATTTTTTCTTACAATGGAAACTAACTGCATCTCAGTAAAATGGCTGTTATGCTGGGAGCTGCATCTAAACTTGTTTAAAAACCATGTCCAGATTGGAAATGTTCAAACGACTCCAGATTCACAGAATCATTAGAATAAATGCATAGTTTCCCAGCGGGGCTGCTTAGAAAGAAGAGCAGAAGTATAACACACGAGTCCCTTTCTTTTTATAGTTTTATTGTTCCAATATGGTCTGGTTCATTCAAATTATCAGCATCAATTTGAAGTGTTTAAATAACTTTTTTTCAGACTCACTGAGGTTCAAGGGTGAGGGGAGAAAGGATGCAAAGAAATAGAGACAGGATTATTAGAGAAAACACTTGGGCCTGAGAACACAGAAAACACACAGTTGTGAGGACACACACTTCTAACCCCACCACACAAGAAGTAGAAGCAGAAAGATCTTGAATTCAAGAGCACCTTGGTCTACATAGTGAGTTTGAGGCCAAACTAGGGTACACAGTAAGACCTGAGGTAGGGAAAGGGTAGTGAGAACCAGTCCTGTCTATGTTTTGTGCTCTGTGTCAGAATACTGGAGACTGAAAAAGACATTATTTGGCTCACAATTCTAGAGACTGGAAGTGTAAGATCGAGGGGCCATACCTTTTAGCTGGGTAATCCTGTGTAATCCCAAGAAGGAAGAATGTGGGCCGGGGTGCCATGGAACAGTGGGGAGCAGACCTGGAGCAAAAGTGGGGTCAAGCTGCATCTAAAGCCTGGGAATCTCACCCTGAGATGGGCAGGCGTAGGATCATTCCTCCTCTGCCCTGGGGCCTGCATGTCCCGAGGAATGTAGCTCTGTTCCCCACCTTTGCCCACAGGAGGAGGTCATGTATCCTAGTAGCCAGGCTCAACTTCCTCTCCTCTCCAAAGGTCACTCCCAGCAGCACCAGGAATTCTTACTTGTGCTAATGAGGCATCCACAGCACCCTAGCCATGCCTAGCCATGCCCAATGTTATATACTCATCCTGAAGAAAACCCCTCCACACTCCCCAAAGGTTTAGCTAGTGGTAGCTCATACCCCCCATTAAATGAGCTGTCTCACTGATGCTGCCTCCCAAGAGCCTGCTCTCAACAAGCTCGCTGATGCTTGAGGTCACTTAACTCCCAACCACCATGCCTTACTTTCCCTCCCAGGATCTTCCAGTCAAGATCTCAGGCTGATCACAGAGCTACAGGTGGGGAGTGGAGCCTGAATGGCAGGGGAAGGACAAGAGAAAGCAAAGGGGAGAATTCAGACTTGAGTCTTTGGGTTCATCATTAATCCATGTACCCAGATAGAGCCTCAAGATCTTACCACTTCTACTTCTTATGGTGTTTGGAGTACATACTCAAAATGTAGCATATCCACATCCCCAGCTGACAAGAGCCTACCAAACCCCACTGGCTACCAATACATTGGTATTAGCTACTTCTTTTTCTCTGTAGCTAAACACCTGACAGAAGGAGCTGAATGGAGAAACAACTGACTTCCATCAGTTTCATCATGGTGGGAAGACACAGCAAGAGCAAACACATGGGGATGGGGCTTCACATCTTGGTGGATGGGATGCAGAACACAGGACTGGAATAGCACCCTACTGTAACCCTCACAGGTCTACCATCAACGATCCACCTCCACTAGGTGGACCTGAAGTCCCAAGGGTTCCATAACCTCCCAACAGCACTGCAAGCTGACGTGTCCCTATGAGCCTATTGGCCATTTCACCTTCAAACCATGACAACATCATGGCTCTGTCCTAAGTGATTATCCTTTCTGTGGATTCCAG
Seq C2 exon
GTACTGACCCTAGCAAGCAACGAGAGAATCCCCCTTAACCCCACAATGCGTCTCCTTTTTGAGATCAGTCACCTGCGCACAGCCACACCAGCAACCGTCTCCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171:ENSRNOT00000005583:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(30.7=100)
A:
NA
C2:
PF077289=AAA_5=PD(25.5=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]