DreINT0058317 @ danRer10
Intron Retention
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10412806-10413169:-
Coord C1 exon
chr6:10413042-10413169
Coord A exon
chr6:10412955-10413041
Coord C2 exon
chr6:10412806-10412954
Length
87 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCGG
5' ss Score
5.96
3' ss Seq
TATACTTGTGTATATATTAGGTG
3' ss Score
6.72
Exon sequences
Seq C1 exon
GTCTATTTTCTTCCACTATGAGAGAGCTTTCTGGCATCTCTCATGATGGGCCGAAGTGGATTGTTCTAGATGGCGACATTGACCCCATGTGGATTGAATCCCTGAACACTGTCATGGATGATAATAAG
Seq A exon
GTTCGGCAGAATGACTTAAAACAATAATGTCACAATGACTGTACTGTGTGTGTACTGAGTGTCTGTATATACTTGTGTATATATTAG
Seq C2 exon
GTGCTTACCTTGGCCAGTAACGAGCGGATATCACTGGCCCCTTCCATGCGCTTGCTGTTTGAGATAAGCCATTTGAAAGCTGCAACACCGGCCACTGTATCAAGGGCTGGAATTCTCTATGTGAACCCTCAGGATCTGGGCTGGAGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630:ENSDART00000150908:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(30.7=100)
A:
NA
C2:
PF077289=AAA_5=PD(25.5=70.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCATGATGGGCCGAAGT
R:
CCGGTGTTGCAGCTTTCAAAT
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]