BtaINT0050268 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30582199-30582959:+
Coord C1 exon
chr4:30582199-30582349
Coord A exon
chr4:30582350-30582810
Coord C2 exon
chr4:30582811-30582959
Length
461 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
3' ss Seq
TGCTGTGCTGCTCTGTCCAGGTG
3' ss Score
9.32
Exon sequences
Seq C1 exon
GATTATTTACTCTCAACTTGCAGGTCTGTTTTCATCCATTCTGCGAGAACAAGCAAATCTTAGGCATGATGGACCTAAATGGATAGTCCTGGATGGTGATATCGATCCCATGTGGATTGAATCACTAAACACTGTCATGGATGATAACAAG
Seq A exon
GTGAACAGAAATACTGTTTATCGTAAAATGCAGGTCTGAGATCTTTATACTTGCATGAGTTTCAGTAGGACAATTTAAAATTGTGATATTTCAGATTCTAAATACAGTTTATTTTTTATGGTATTCAGGCCTTTTCATGTTAAAACCGTTAAAACGAAAGTCTTAAATTTAGATAATTACCATAGTTGTTTAAAAGTTGGCATGAGTAAGTGCACGTTGATGAGTTTGTTCCTCAGGGGTCAGTGAGCTCCCCTGGGGATGAACTGATATCTTTATTGAGACTGCATTTCTCACTCGGGCAGGGATCATTTCTAACTTGGGCACTGAGCTCATATGTAGCCTTTGGCACTTCTCCTGGGGGCAGGGCGGGGGGCGGTACTTCTTGCTGTTGTGAAAAGTTAGCAGCCTTGCCTTTGCTCCCTAATGAAGTGGCCGCTTTTGTGCTGTGCTGCTCTGTCCAG
Seq C2 exon
GTGCTGACACTGGCCAGCAATGAGCGCATAGCTCTGACTCCCTCTATGAAGCTGCTCTTTGAGATTCATCACTTGAGGACTGCAACCCCAGCTACTGTTTCCAGAGCTGGTATTCTGTATGTGAACCCACAAGATTTAGGCTGGAATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078:ENSBTAT00000061103:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(34.2=100)
A:
NA
C2:
PF077289=AAA_5=PD(24.0=70.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACTCTCAACTTGCAGGTCTGT
R:
GGATTCCAGCCTAAATCTTGTGGG
Band lengths:
294-755
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]