RnoINT0048672 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145943540-145945042:-
Coord C1 exon
chr6:145944915-145945042
Coord A exon
chr6:145943689-145944914
Coord C2 exon
chr6:145943540-145943688
Length
1226 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
CCACATGCCGCTCATTGTAGGTG
3' ss Score
7.06
Exon sequences
Seq C1 exon
GTCTCCTCTCGTCCATTCTGAGAGAGCAGGCAAATCTCACACATGATGGGCCAACCTGGATAGTCCTGGATGGTGATATTGACCCACTGTGGATCGAGTCCTTGAACACGGTCATGGATGATAACAAG
Seq A exon
GTGAATGATACTCCGGGGTTGAGAGCGCTGTTCACCTGCTGATGTCTATAATCTCCCATGATCCTCAATGCACTATTTCTTATGTAGTCATTCTTTTTGATGAATGATATTTCCCTCAGAGTTCATAGCTTAAAATTTGGGGGGAATATGTTTACCTCGCCTCTAAATTGAATTACCATTCATAAAAGTTAGGTACATAGATAAGAATTTGGTTTATCTGTTTTATTGTTTTCTAAGAGGCAGGCATTAAATTCGTATATCTTTCATGGTCAGATTAAATATTGGTACTGAGAAAACAAAAGAATTAGTTTGTGCCGTATGATCACTAATGAAACCAGGCAATGCAAATTAAGTTGTCTCATGGCTACAGATTGTGTTTAAATGTTTTCCCAAACATGTTCTGTGGTTGTCCTGGGAACAGCAAAGACAAAAGGCCCTATGTGATACCAAAAAGGGAATCCGAGGCCTGTAGTTGGGGCAGAGAGAGAGATCAGGAACCAACACTACTCCCAGGTAGCATCAGTGGCCACTGATTTCTGAATGAAGACATTGTTTATCAGAAAACAGAGGTTGAAGCCTATGTACCTGTAGGGAGCGGCTAAAGATGGCTCCGACATCCGGTGGTCGTTAGTGATAAACACCTGCAATGTGCATGTGTTGGCATTTCTCCGGCAGTTATCAGACTGGAGTGATATTCATGCTAATAAGGTATTTCATACTCCACCAATCCCCAGAGGACAAGTTTACAGCCACAGCCTGTCTTGTATTTAAGGCGAGTGCCTTTGTTCCCCGGGGTCCCCTGTATCAAGAATGAGGTGTTCCTACAATAAAGGCTGTTGAGAAGAATCCAACGGTGTTGCGTCTTCCTTGCTGGATGAGATGGGCGCATCATGTACCTATATGAGAGACAACAGGACACTTGGGAACTACAGTGTTGCACATTCTCAGTTGTGGAATTCAGCTTTTACAAGAGTCCACTTACATTTGGGTTAGTAACAGTTCCTATGGCTACTGGAGGCTGGGCCATCATGAGCCTGTAAGGCAATTTTATTCCTTAAGGATTCGGCCAGAGTGCCTCCACGTGGGCTCAGATGTGAATTCAGGTGAGTCCACCTGTGGCTGTCCTATTAGGGGTGTCACTAGCTGTGATGGTCTGTTGGCTGCTGTTCCAGCTCCTGGTGGTAGTTCTCCTTTGGTAACCACCAACCACATGCCGCTCATTGTAG
Seq C2 exon
GTGCTGACCCTCGCCAGCAATGAACGAGTGGCCCTCACACCCTCCATGAGGCTTCTGTTTGAGACCCACCACCTACAGACAGCCACACCAGCCACGGTCTCCAGAGCTGGCATTTTGTATGTGAACCCGCAGGACCTGGGCTGGAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(30.7=100)
A:
NA
C2:
PF077289=AAA_5=PD(25.5=70.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCGTCCATTCTGAGAGAGCA
R:
GGTTCCAGCCCAGGTCCT
Band lengths:
270-1496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]